Actinomyces radicidentis: AXF14_10305
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Entry
AXF14_10305 CDS
T04288
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ard
Actinomyces radicidentis
Pathway
ard03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ard00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF14_10305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ard03019
]
AXF14_10305
03009 Ribosome biogenesis [BR:
ard03009
]
AXF14_10305
Enzymes [BR:
ard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXF14_10305
Messenger RNA biogenesis [BR:
ard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF14_10305
Ribosome biogenesis [BR:
ard03009
]
Prokaryotic type
rRNA helicases
AXF14_10305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RepB
Cas3-like_C_2
adh_short
RRM_occluded
Motif
Other DBs
NCBI-ProteinID:
AMD87898
UniProt:
A0A0X8JGD3
LinkDB
All DBs
Position
complement(2416490..2419117)
Genome browser
AA seq
875 aa
AA seq
DB search
MSTNNVTSAPTGRPLGLDDLFSDAMGAPAPESPEAPGSETDGPEPAGPEELAAPHRSISQ
SPDSAASAPSAPSAPSFATPTSSDSPEDPEDVDHEDEEDDVDTAAELALPESDPEDEDDE
DADDGIEVDEDEVDGRAPFLDGDDEDDSEDQEGAPAAKKPEEVTFADLGLPADLLKAVTD
MGFTTPTDIQREAIPTLLFGRDVVGVAQTGTGKTAAFGLPLLDAVDAHDGEVQALVLAPT
RELALQSAEAITDMAHRSRGLDVVAVYGGSPYGPQISALKGGAQVVVGTPGRVIDLIEKG
ALRLGSVRYFVLDEADEMLRMGFAEDVETIAASLPEDRRTALFSATMPAAIQRVARQHMT
DPVQVEVSRQSSTVDTVHQTYAVVPFRHKVGAVSRVLAVTDAEAAIVFVRTKSTAEDVAI
ELSGRGIQAAAISGDVPQRERERLVERLRQGTLDVLVATDVAARGLDVDRIGLVVNFDVP
REAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGTRLEEITLPSPADVSRHR
AGRLLEKAAARHERGRLGMYTELVTARSEELGLSVEDLTATLLALAVGDEGPRRRDDEAD
GGKRQRVRREENVDAEGTFVSAAFEPGRGERSRDRDDRDRKPGAARGGRPRPEGPGTVYR
VEVGHRDRVMPGAIVGALANEGGIAGSDIGKIDILQSFSLVTIHTDLTEDQLDRMRHATF
GGRELRIRPDEGPGHGWDGPNDDNAPSEFSQRRAGRPHRDDDRGDRRGGFRGDRGDRRDD
RGGYRGGKRFDRDDRRDDRRGGYRGDRDDRRGERRDDRGGYRGGKRFDRDDRRGGFRGDR
DDRRGDRRNDRGGYRGGNRRDGGRGGDRGFRGDRW
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacaacgtcaccagtgcgcccaccggccgccccctcggcctggacgacctc
ttcagcgacgccatgggcgctcccgccccggagagccctgaggcccccgggtccgagacg
gacgggcccgagcccgccggccccgaggagctcgccgccccgcaccgcagcatctcgcag
tcccccgactccgcggcctcggccccctccgccccctcggcgccctccttcgcgaccccg
acctcctccgactcccccgaggacccggaggacgtcgaccacgaggacgaggaggacgac
gtcgacaccgccgcggagctggccctgcccgagtccgaccccgaggacgaggacgacgag
gacgccgacgacggcatcgaggtcgacgaggacgaggtcgacggccgcgcccccttcctc
gacggcgacgacgaggacgactccgaggaccaggagggcgcccccgcggccaagaagccc
gaggaggtcaccttcgccgacctcggcctgcccgccgacctcctcaaggccgtcaccgac
atgggcttcacgacgcccaccgacatccagcgcgaggccatcccgaccctcctgttcggc
cgcgacgtcgtcggcgtcgcccagaccggcaccggcaagaccgccgccttcggcctgccg
ctcctcgacgccgtcgacgcccacgacggcgaggtccaggccctcgtcctggcccccacc
cgcgagctcgccctccagagcgccgaggccatcaccgacatggcccaccgctcccgcggc
ctcgacgtcgtcgcggtctacggcggctccccctacggcccgcagatcagcgccctcaag
ggcggcgcccaggtcgtcgtcggaaccccgggccgcgtcatcgacctcatcgagaagggc
gccctgcgcctgggcagcgtccgctacttcgtcctggacgaggccgacgagatgctccgc
atgggcttcgccgaggacgtcgagaccatcgccgcctcgctgccggaggaccgccgcacc
gcgctgttctccgcgaccatgccggccgccatccagcgtgtcgcccgtcagcacatgacc
gacccggttcaggtcgaggtctcccgccagtcctccaccgtcgacacggtccaccagacc
tacgcggtggtccccttccgccacaaggtcggcgccgtctcccgcgtcctggccgtcacc
gacgccgaggccgccatcgtcttcgtgcgcaccaagtccaccgccgaggacgtcgccatc
gagctgtccggccgcggtatccaggccgccgccatctccggcgacgtcccgcagcgcgag
cgcgagcgcctcgtcgagcgcctccgtcagggcaccctcgacgtcctggtcgccaccgac
gtcgccgcccgtggcctcgacgtcgaccgcatcggtctcgtcgtcaacttcgacgtcccg
cgcgaggccgaggcctacgtccaccgcatcgggcgcaccggccgcgccggccgccacggc
gaggccgtcaccttcctcacccccaaggagaagggcaagcttcgccagatcgagcgcctc
accggcacccgcctcgaggagatcaccctgccctcccccgccgacgtctcacgccaccgc
gccggcaggctcctcgagaaggccgccgcccgccacgagcgcggccgcctcggcatgtac
accgagctcgtcaccgcccggagcgaggagctcggcctgagcgttgaggacctcaccgcg
acgctcctcgccctcgccgtcggcgacgagggcccgcgccgccgcgacgacgaggcggac
ggcggcaagcgccagcgcgtgcgccgcgaggagaacgtcgacgccgagggaaccttcgtc
tccgccgctttcgagcccgggcgcggcgagcgctcgcgcgaccgtgacgaccgcgaccgc
aagcccggcgccgcccgcggcggccgaccgcgcccggagggccccggcaccgtgtaccgc
gtcgaggtcgggcaccgggatcgcgtcatgcccggcgcgatcgtcggcgccctcgccaac
gagggcggtatcgccggctccgacatcggcaagatcgacatcctccagtccttctccctc
gtcacgatccacaccgacctcaccgaggaccagctcgaccggatgcgtcacgcgaccttc
ggcggccgcgagctgcgcatccgcccggacgagggcccgggccacggctgggacggcccc
aacgacgacaacgcgccgagcgagttctcgcagcgtcgcgccggccgcccgcaccgcgac
gacgaccgcggcgaccgacgcggaggcttccgcggtgaccgtggggaccgccgtgacgac
cgtggcggctaccggggcggcaagcgcttcgaccgcgacgaccgacgtgacgaccgccgg
ggcggctaccgcggggaccgcgacgaccgccgtggcgagcgccgtgacgaccgtggcggc
taccggggcggcaagcgcttcgaccgcgacgaccgacgcggaggcttccgcggtgaccgc
gacgaccgccgtggggaccgtcggaacgaccgcggcggctaccggggcggcaaccgccgc
gacggcgggcgcggtggcgaccgcggtttccgcggcgaccgctggtga
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