Actinacidiphila reveromycinica: RVR_5621
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Entry
RVR_5621 CDS
T10579
Name
(GenBank) putative DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
arev Actinacidiphila reveromycinica
Brite
KEGG Orthology (KO) [BR:
arev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arev03032
]
RVR_5621
03400 DNA repair and recombination proteins [BR:
arev03400
]
RVR_5621
Enzymes [BR:
arev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RVR_5621
DNA replication proteins [BR:
arev03032
]
Prokaryotic type
DNA Topoisomerases
RVR_5621
DNA repair and recombination proteins [BR:
arev03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RVR_5621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BBA99130
UniProt:
A0A7U3UUU1
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All DBs
Position
4780429..4783278
Genome browser
AA seq
949 aa
AA seq
DB search
MSPTRETAQGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPAEYKGQ
PWARLGVNVDSDFQPIYVVNADKKAQVKKLKDLLKESDELFLATDEDREGEAIAWHLQEI
LKPKVPVHRMVFHEITKDAIQAAVRNPRELNQRLVDAQETRRILDRLYGYEVSPVLWKKV
MPRLSAGRVQSVATRLVVERERERIAFRTSEYWDLVGVFNTGRAGDASDPATLNARLVAV
DGRRVAQGRDFDASTGALKQSAAVLHLDEEHARALAAALADAQFSVRSVESKPYRRSPYA
PFRTTTLQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSETAVGAARAQVTQL
YGADYLPDKPRVYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWMRTVAS
QMKDAVGQSVTVRVGGAASDGRDAEFSASGKIITFHGFLKAYVEGADDPNAELDDRERRL
PQVAEGDPLTADGITADGHSTKPPARYTEASLVKELEEKEIGRPSTYATILGTILDRGYV
FKKGTALVPSFLSFAVVNLLEKHFGWLVDYDFTASMEDDLDRIARGEAEAVPWLRRFYFG
QEGDAAAGAAQPDPAGGDHLGGLKELVEDLGAIDAREISSFPVGDGIMLRVGRYGPYVEK
GERGEDDHKRADIPEDLPPDEMTVELAQELFAKPSGEFALGTDPDTGRPIVAKDGRYGPY
VTEVLPEDTPKTGKNAVKPRTASLFKSMSLDTVTLADALKLMSLPRVVGTDAEGVEITAQ
NGRYGPYLKKGTDSRSLESEDQLFSITLEQALAIYAQPKARGRAAAKPPLKELGTDPVSE
RPVVVKDGRFGPYVTDGETNATLRRDDDVETITPERGYELLAEKRAKGPAKKKAPAKKTA
AKKAPAKAPAKKAAAKKTASSAASAKKAPAKKTTAAKKTATKKAGSATE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgacccgcgagaccgcacagggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctatctcggccctggatacgtcgtcgaggccagcgtc
gggcacatccgcgacctccccaacggggccgccgaagtgccggcggagtacaagggccag
ccgtgggcgcggctcggcgtcaatgtggacagcgatttccagcccatctatgtcgtgaac
gccgacaagaaggcacaggtcaagaagctcaaggatctcctcaaggagtccgacgaacta
ttcctggccactgacgaggaccgcgagggcgaggccatcgcctggcatttgcaggaaatc
ctcaagcccaaggtcccggtgcaccggatggtgttccacgagatcaccaaggacgccatc
caggcggccgtgcgtaatccgcgcgagctgaaccagcggctggtcgacgcccaggagacc
cgccgcatcctcgaccggctctacggctacgaggtctcccccgtgctgtggaagaaggtc
atgccgcggctgtcggcgggccgggtgcagtccgtggcgacccgcctggtggtcgagcgc
gagcgcgagcggatcgccttccgcacctcggagtactgggatctggtcggcgtcttcaac
accggccgggccggcgacgcctccgaccccgccacgctcaacgcccggctcgtcgcggtc
gacggccgccgcgtcgcccagggccgcgacttcgacgcctccaccggcgccctcaagcag
agcgccgcggtactgcacctcgacgaggagcacgcccgggccctggccgccgcgctcgcc
gacgcgcagttctcggtgcgcagcgtcgagtccaagccctaccggcgctcgccgtacgcg
cccttccgcaccaccaccctccagcaggaggcgtcgcgcaagctcggcttcggcgcgaag
gccaccatgcaggtcgcccagaagctgtacgagaacggcttcatcacctacatgcggacg
gactccaccacgctgtcggagaccgccgtcggcgccgcccgcgcgcaggtcacgcagctc
tacggcgccgactacctgccggacaagccgcgtgtctacgcgggcaaggtgaagaacgcc
caggaggcccacgaggcgatccgcccctccggcgaccgcttccgcacccccgccgagacc
ggcctgaccggcgaccagttccggctctacgaactcatctggatgcgcaccgtcgcctcg
cagatgaaggacgcggtcggccagtccgtcaccgtgcgggtcggcggcgccgcctccgac
ggccgggacgccgagttctccgcctccggcaagatcatcaccttccacgggttcctcaag
gcgtacgtcgagggcgccgacgaccccaacgcggagctggacgaccgcgagcgccggctg
ccgcaggtcgccgagggcgacccgctgaccgccgacgggatcaccgccgacggccactcc
accaagccgcccgcccgctacaccgaggcgagcctggtcaaggagttggaggagaaggag
atcggccgcccctcgacctacgccacgatcctcggcaccatcctcgaccgcggctacgtc
ttcaagaagggcaccgcgctcgtcccgtccttcctctccttcgccgtggtcaacctgctg
gagaagcacttcggctggctggtcgactacgacttcaccgcctccatggaggacgacctc
gaccggatcgcgcgcggcgaggccgaggcggtgccgtggctgcgccgcttctatttcggc
caggagggcgacgccgcggccggcgccgcccagcccgaccccgccggcggcgaccacctc
ggcggcctgaaggaactcgtggaggacctcggcgcgatcgacgcccgcgagatctcctcg
ttcccggtcggcgacggcatcatgctgcgggtcggccgctacggcccctacgtcgagaag
ggcgagcgcggcgaggacgaccacaagcgcgccgacatccccgaggacctgccgccggac
gagatgaccgtcgaactggcgcaggagctgttcgccaagcccagcggtgagttcgcgctc
ggcaccgacccggacaccggccgcccgatcgtcgccaaggacggccgctacgggccctac
gtcaccgaggtgctgcccgaggacaccccgaagaccggcaagaacgcggtgaagccgcgc
accgcctccctcttcaagtcgatgtcgctggacaccgtcaccctcgccgacgccctcaag
ctgatgtcgctgccccgggtggtcggcaccgacgccgagggcgtcgagatcaccgcgcag
aacggccgctacggcccgtacctgaagaagggcaccgactcccgctccctggagagcgag
gaccagctcttcagcatcacgctggaacaggcgctggcgatctacgcccagccgaaggcg
cgcggccgtgccgccgccaagcccccgctgaaggaactgggcaccgatccggtcagcgag
cgccctgtcgtggtcaaggacggccgcttcggtccctacgtcaccgacggcgagaccaac
gcgacgctgcgccgcgacgacgacgtcgagacgatcacccccgagcgcggctacgaactc
ctcgcggagaagcgcgcgaagggcccggccaagaagaaggcgcccgcgaagaagacggcg
gcgaagaaggctccggccaaggctcccgcgaagaaggccgcggccaagaagaccgcctcc
tctgccgcgtccgcgaagaaggcgcccgccaagaagaccaccgccgcgaagaagaccgcg
acgaagaaggccggctccgccacggagtga
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