Actinacidiphila reveromycinica: RVR_5978
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Entry
RVR_5978 CDS
T10579
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arev Actinacidiphila reveromycinica
Brite
KEGG Orthology (KO) [BR:
arev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arev03016
]
RVR_5978
Enzymes [BR:
arev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RVR_5978
Transfer RNA biogenesis [BR:
arev03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RVR_5978
Prokaryotic type
tRNA splicing ligases
RVR_5978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBA99382
UniProt:
A0A7U3UV24
LinkDB
All DBs
Position
5056893..5058086
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AA seq
397 aa
AA seq
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MSYTELPGVHVPIRMWADPASVEHGALQQLRNVSSLPWVKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVRTSLRAGDLPGDLSRLRTKIEQAIPVGRGMHADPVDPR
SVHGFRTAGWSDFWSRFDGLADAVKFRAERAAQQMGTLGSGNHFVELCTDTSDAVWLMLH
SGSRNIGKELAEHHIGVAQGLSHNKGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKHNR
AVMMALFQGVVAKEFKKARPTFEQVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVRGLGNGAAFNSASHGAGRRMSRSAAKRRFTVRDLAEQTRGVECRKDSG
VVDEIPGAYKPIEQVMEQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgagctgccgggcgtccacgtaccgatccggatgtgggccgatcccgcg
tccgtcgagcacggcgccctccagcagttgcgcaacgtctcctcgctgccctgggtcaag
ggcctcgcggtcatgcccgacgtgcactacggcaagggcgcgacggtcggctcggtcatc
gcgatgcacggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcggcatgagc
gcggtcaggacctcgctgcgggcgggcgacctcccgggcgacctgtcccggctgcggacg
aagatcgagcaggccatcccggtcggccgcggcatgcacgcggacccggtggacccgcgc
tcggtccacggcttccgcaccgcgggctggtccgacttctggtcccgcttcgacggcctc
gccgacgcggtgaagttccgcgccgagcgcgcggcccagcagatgggcacgctggggtcg
ggcaaccacttcgtcgaactgtgcacggacacgtccgacgcggtgtggctcatgctgcac
tcgggctcccgaaacatcggcaaggaactcgccgagcaccacatcggggtcgcccagggc
ctgtcgcacaacaagggcctggtcgaccgcgacctcgcggtcttcgtcgccgacaccccg
cagatggccgcctaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgt
gcggtgatgatggccctgttccagggcgtggtcgccaaggagttcaagaaggcccggccc
accttcgaacaggtcatctcctgccaccacaactacgtggccgaggagcggtacgacggg
atggacctgctcgtcacccgcaagggcgcgatccgcgcggggagcggcgagtacggcatc
atccccggctccatgggcaccggttcgtacatcgtgcgggggctcggcaacggcgcggcg
ttcaactccgcctcccacggcgcgggccgccggatgagccggagcgcggcgaagaggcgc
ttcaccgtccgggacctcgccgagcagacccgcggcgtggagtgccgcaaggactccggc
gtggtggacgagatcccgggcgcgtacaagccgatcgagcaggtgatggaacagcagcgc
gacctggtcgaggtggtggcgaagctcaagcaggtcgtctgcgtcaagggctga
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