Actinacidiphila reveromycinica: RVR_6190
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Entry
RVR_6190 CDS
T10579
Name
(GenBank) putative RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arev Actinacidiphila reveromycinica
Pathway
arev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RVR_6190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arev03021
]
RVR_6190
03400 DNA repair and recombination proteins [BR:
arev03400
]
RVR_6190
Enzymes [BR:
arev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RVR_6190
Transcription machinery [BR:
arev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RVR_6190
DNA repair and recombination proteins [BR:
arev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RVR_6190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
BBA99527
UniProt:
A0A7U3UVB0
LinkDB
All DBs
Position
5213026..5216925
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRTRDLPSLEAQVSVERQQVEQRRDADVEGRQKKLEAD
LGELENEGAKADVRRKVREGAEREMKQLRDRAQRELDRLDEVWARFKNLKVQDLEGDELL
YRELRDRFGTYFQGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTTNKPGGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDSEEREVRGE
GRAFGATAEAIMAFDARELSMQAKVDIRFPVGTVPPRGWTPPEPVEGEEPYQVGDSFRLR
TTLGRALFNELLPEDYPFVDYAVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAVTDIVVPEAKKGLIASYEALDEKVQKQYERGLITKQERSDELINIWTKATNEV
AQAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRIAERA
EDGSLRKAEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDQLLRHGVEEVKTRSIL
TCESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARVPKGVAPISEAAGRVRVEETEKTKKIVVTPDDGADEIAYPISKRVKL
QVGEGDHVEVGQKLTYGATNPHDVLRILGQRQVQIHLVQEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERGRFETENRRVVSEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAIHAKSDSLLGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cggacctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtg
gaggtcacgcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggcgttccctcgcgcctggggtacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacctgggtggac
gacgagcgccgcacccgcgacctgccctcgctggaggcccaggtctccgtggagcgccag
caggtcgagcagcgccgcgacgccgacgtcgagggccggcagaagaagctggaggccgac
ctcggcgagctggagaacgagggcgccaaggccgacgtccgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagctggaccggctcgac
gaggtgtgggcccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttccagggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgcgccctgaagcggctcaaggtggtgtcc
gccttcctgcagaccaccaacaagcccggcggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtccagctcgacggtggccggttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgccgcggccgcccggtcacgggtcccggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactccgcccgctcggtgatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgccgagcacccggtgctgctcaaccgc
gcgccgaccctgcaccggctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgcccggtcaccatgccgacccaggac
atggtgctcggcctgttcttcctgactacggactccgaggagcgcgaggtcaggggcgag
ggccgggcgttcggcgccaccgccgaggcgatcatggccttcgacgcgcgcgagctgtcc
atgcaggcgaaggtggacatccgcttcccggtgggcaccgtcccgccgcgcggctggacc
ccgccggagccggtggagggcgaggagccgtaccaggtcggtgacagcttccggctgcgc
accaccctgggccgggcgctcttcaacgagctgctgcccgaggactacccgttcgtggac
tacgcggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtgatcgtggcggcgacgctcgacaacctgaaggcggccggcttccactgggcgacc
cgctcgggcgtcaccgtggccgtcacggacatcgtggtgcccgaggcgaagaagggcctc
atcgcctcctacgaggcgctggacgagaaggtccagaagcagtacgagcgcggcctgatc
accaagcaggagcgctcggacgagctgatcaacatctggaccaaggcgaccaacgaggtc
gcgcaggcgatgaacgccaacttcccgaagaccaacccgatcttcatgatggtcgactcg
ggcgcccgcgggaacatgatgcagatgcgtcagatcgcgggtatgcgcggcctggtgtcc
aacgccaagaacgagacgatcccgcgtccgatcaaggcgtccttccgcgagggcctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggccgacaccgcgctg
cgcaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatcgccgagcgcgcc
gaggacggctcgctgcgcaaggcggaggacgtcgagaccagcgtgtacgcgcggatgctc
gccgaggacgtcgtggtggacggcaaggtcatcgcccccgccaacgtcgacctgggcgac
gtgctcatcgaccagctcctgcggcacggcgtcgaggaggtcaagacccgctcgatcctc
acctgcgagtcggccgtcggcacctgcgcctactgctacgggcgctcgctggccaccggc
aagctggtggacatcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccc
ggcacccagctcacgatgcgcaccttccacaccggtggtgtggccggtgacgacatcacg
cagggtctgccgcgtgtggtcgagctcttcgaggcgcgcgtgcccaagggtgtcgcgccg
atctccgaggcggccggccgggtccgggtcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcgccgacgagatcgcctacccgatctccaagcgcgtcaagctc
caggtcggcgagggcgaccacgtcgaggtgggccagaagctcacctacggcgcgaccaac
ccgcacgacgtgctgcgcatcctcggccagcgccaggtccagatccacctggtgcaggaa
gtgcagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgggtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtcgagcgcggccggttcgagaccgagaaccgccgtgtggtctccgagggc
ggtcacccggcctcgggccgtccgcagctgatgggtatcaccaaggcctcgctggccacc
gagtcctggctgtcggccgcctccttccaggagacgacccgggtgctgacggacgcggcg
atccacgcgaagtcggactcgctgctgggcctgaaggagaacgtcatcatcggcaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtggagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactacagcccgttcggc
accggctccggccaggcggtgccgctggaggactacgactacggcccgtacaacggctga
DBGET
integrated database retrieval system
