Archaeon GW2011_AR20: QT11_C0001G0998
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Entry
QT11_C0001G0998 CDS
T03843
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
arg
Archaeon GW2011_AR20
Pathway
arg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QT11_C0001G0998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arg03019
]
QT11_C0001G0998
Messenger RNA biogenesis [BR:
arg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QT11_C0001G0998
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
QT11_C0001G0998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N
RRP4_S1
ECR1_N_2
KH_1
RRP40_S1
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AJF63122
UniProt:
A0A0B5HXQ5
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All DBs
Position
791041..791724
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AA seq
227 aa
AA seq
DB search
MTKLLINEREIVVPGEELAEGMDFLPSHGTYRDKDKIVSSKLGVVSVNKTIIKVIPLTGR
YMPKIDDIVIGRVIEIGFYGWSVDIGSAYPATLSIRDATEFIDKGENLTKYYDYGDILAA
QVIRTTRYNSIDITTKGPGLKKLSGGKVIEVTPSKVPRMIGKQGSMISMIKDATGCNILI
GQNGRVWIKGTNLENENLVTKTIMKIEEESHIDGLTDKIKKLLESKK
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattattaataaatgaaagggaaattgtggtgccgggagaagagctggcagaa
ggaatggatttcctgccaagccatggaacttaccgtgataaagacaagattgtttcaagc
aagcttggagttgtaagcgtaaataaaactataataaaagttatcccattaacaggaaga
tatatgccgaaaatagatgatattgtaatcggaagggtaattgaaatcgggttttatggc
tggagcgttgacatcggaagcgcttatcctgccacattgtctataagagatgccactgaa
ttcattgataaaggggagaacttaacaaaatactatgattatggcgatattctggcagcc
caggtaatcagaacaacaagatataattcaattgacataacaacaaaaggacctggattg
aaaaaattatccggcggcaaggtaattgaggttacgccaagcaaggttccgagaatgatc
ggaaaacaaggaagcatgatttcaatgataaaggatgcaacaggttgtaatatcctgatt
gggcagaacggaagagtctggatcaagggaacaaatctggaaaacgaaaatttggtaaca
aaaaccatcatgaagattgaagaagaatcacacatagacggattaactgacaagataaag
aaattattggagagcaaaaagtaa
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