Archaeon GW2011_AR20: QT11_C0001G1000
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Entry
QT11_C0001G1000 CDS
T03843
Name
(GenBank) Ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
arg
Archaeon GW2011_AR20
Pathway
arg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QT11_C0001G1000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arg03019
]
QT11_C0001G1000
Messenger RNA biogenesis [BR:
arg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QT11_C0001G1000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
QT11_C0001G1000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AJF63124
UniProt:
A0A0B5I4C1
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All DBs
Position
792426..793187
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AA seq
253 aa
AA seq
DB search
MNNDYIISLIQQDKRVDERKFDEMREIEIETNISKNAEGSARCKMGDTEVMVGIKMDIGE
PYPDNPDEGTIIVTAELLPLASPVFELGPPGPQATELARIVDRGIRESKCLDFKKLCIKK
GEKVWMVFIDIYPLNDDGNLIDASVLATLAALKNAKIPKVENDAVVFGEFTNKKLELNKL
PITFTFGKIGNKILLDLNSKEESVIDSRLSISVNEGNIHAMQKGGDKVITMEEVEQMVDM
AIKKEKELRSLIK
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgattacataatatcacttatacaacaggataaaagagtagacgagagaaaa
tttgatgagatgagggaaatcgagatagaaaccaatatttcaaagaatgcagaaggaagc
gcccgctgcaagatgggggatacagaagttatggtgggaattaaaatggatattggcgag
ccttatccagataacccagatgaaggaacaattattgtgacagctgaattattgcctttg
gcttctcctgtatttgaattaggacccccgggaccccaggcaactgaattggcaagaata
gttgatcgtggaataagggaaagcaagtgtttagatttcaaaaaattatgcattaagaaa
ggagaaaaagtatggatggtttttatagatatttatcctttaaatgatgacggcaattta
attgatgcaagcgtgctagcaacattagccgccttaaaaaatgccaagattccaaaggta
gagaatgatgcggttgtattcggggaatttacaaacaaaaaacttgaattgaataaactg
ccaatcacattcacttttggaaagataggaaacaaaatcttgcttgacttaaattcaaag
gaggaaagtgttatagattcaagattgagcatttctgtaaatgaaggaaatattcacgca
atgcaaaaaggcggagacaaggtaattacaatggaagaagttgaacaaatggttgatatg
gcaattaaaaaagaaaaggagttaaggagtttgataaaatga
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