Arthrobacter sp. Hiyo8: AHiyo8_16540
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Entry
AHiyo8_16540 CDS
T04181
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arh
Arthrobacter sp. Hiyo8
Pathway
arh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AHiyo8_16540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arh03400
]
AHiyo8_16540
Enzymes [BR:
arh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AHiyo8_16540
DNA repair and recombination proteins [BR:
arh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AHiyo8_16540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
SLFN-g3_helicase
DUF3638
DUF6811
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAS13351
LinkDB
All DBs
Position
complement(1147990..1149072)
Genome browser
AA seq
360 aa
AA seq
DB search
MPTDQLDQVTRYVGGDTPSLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHA
FAPDTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAA
FKAVQDGKQVAVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQGAKEAKETMEGVRNG
SVDVVIGTHRLLSKDFEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRT
LEMSLTGIRETSTLATPPEERHPVLTYVGPFTNKQTSAAIRRELMREGQVFFVHNRVSSI
ERIAAQIRELVPKPASKWRMGRCPRAAWKRSSWISGRSVLTSWSAPPSSKPAWIFPMPTP
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
gtgcccacggaccagctggaccaggtgacccgctatgtcggcggcgatacgccctcgttg
agcaagatgggcggggcggactgggcgagcaccaagtccaaggcccggaaggccgtcaag
gaaatcgcgggcgagctcatcaggctgtactccgcccgcatggcctcgcgcggacatgcc
ttcgcgccggacacgccgtggcaacgggaacttgaggaagccttcccgtatgtggagacg
ccggaccagctcaccaccatcaacgaggtcaaagccgacatggaacgcgagatccccatg
gatcgcctggtctcgggagacgtcggctacggaaagaccgagatcgcggtcagggccgcg
ttcaaggcggtgcaggacggcaagcaggtcgcggtactggttcccaccacgctgctcgcc
cagcagcactatgagacattcaccgagcggttctccggattccctctgcgcgtcaagccg
ctgtcccgcttccaaggcgcgaaggaagccaaggaaaccatggagggagtcaggaacggc
tccgtggacgtcgtcattggcacgcaccgcctgctgtccaaggacttcgagttcaaggac
cttggcctggtgatcgtggacgaggagcagcgcttcggtgtggagcacaaggaagcgctc
aagaagatgcgcaccaacgtggacgtcctggccatgagcgccactcccatcccgcgtacc
ttggagatgtccctcacgggcatccgcgaaacgtccacgctggccacgccaccggaggag
cggcaccccgtgctgacgtacgtcgggccgttcaccaacaagcagacctccgcggcgatc
cggcgcgaactcatgcgcgaaggccaggtcttcttcgtccacaaccgggtgtcctcgatt
gagcgcatcgccgcccagatccgggaactcgtcccgaagcccgcgtcgaagtggcgcatg
ggcagatgtccgagagccgcctggaaaagatcatcgtggatttctgggagaagcgttttg
acgtcctggtctgcaccaccatcatcgaaaccggcctggatatttccaatgccaacaccc
tga
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