Amycolatopsis rhabdoformis: VSH64_00235
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Entry
VSH64_00235 CDS
T09694
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03030
DNA replication
arhd03430
Mismatch repair
arhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSH64_00235
03430 Mismatch repair
VSH64_00235
03440 Homologous recombination
VSH64_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhd03032
]
VSH64_00235
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_00235
Enzymes [BR:
arhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VSH64_00235
DNA replication proteins [BR:
arhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VSH64_00235
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VSH64_00235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
Sulfotransfer_3
RNase_H_2
WHD_2nd_Lhr
UVR
Motif
Other DBs
NCBI-ProteinID:
WSE30579
UniProt:
A0ABZ1I8R5
LinkDB
All DBs
Position
complement(45572..47290)
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AA seq
572 aa
AA seq
DB search
MDTRPRPGQAQLAFDELGTPLRDTTFVVFDLETTGTKPGPDAITEIGAVKVRAGEVLAEF
ATLVNPGSPIPPQVVELTGITQAMVYDAPRIERVLPAFLEFISGAVLVAHNSGFDTGFMR
AACEGHGYVWPRATVICTVKLARRVIPREEARSYRLSNLAMLLGSRTRPTHRALDDARAT
VDVLHALLERVGNVGVHTVEELVDYLPEVTTAQRRKRHLAADLPARPGVYLFRGPREEVL
YVGTARDLKRRVRQYFTGSESRGRIREMVALAERVEAIECAHSLEAEIRELRLIAAHRPM
YNRRSKNPHHAWWIGLTDEAFPRLSVVRLPREGTLGPFRSQADARTAADTLAGAAGLRTC
TMRISARGGSATPCVLAELGRCGAPCAGRQSVEDYSPSVIAARDLISGHDGGPLRVAADQ
LDRLADGRHYEQAARHRDELADLVRAVGRSHRQAALAAVAELIAAHPDGNGGWELSVIRH
GRLASAGVARRGVPPMPVVDQLVAAAETVLPGEGPLRGASGEEITVLLRWLARPGVRLVR
TTRPWAEPTAVAGWRGWLDLAAGARTLERVAG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggacacccgaccgcggcccggccaggcgcagctggccttcgacgagctcggcaccccg
ttgcgggacaccacgttcgtcgtgttcgacctcgagaccacgggcacgaagccggggccc
gacgcgatcaccgagatcggggctgtgaaggtgcgtgccggtgaggtgctggccgagttc
gccacgctggtgaacccggggtcgccgatcccgccacaggtggtggagctcacgggcatc
acgcaggccatggtctacgacgcgccgcggatcgagcgggtgctgccggcgttcctcgag
ttcatctccggcgcggtgctcgtggcgcacaactcgggcttcgacaccggcttcatgcgg
gccgcgtgcgaaggtcacggctacgtctggccccgcgccacggtgatctgcacggtgaag
ctcgcccgtcgcgtgatcccgcgcgaggaggcccgcagctaccggttgtcgaacctggcg
atgctgctcggctcgcgcacccggcccacgcaccgcgccctcgacgacgcccgcgcgacc
gtcgacgtgctccacgccctgctggagcgggtcggcaacgtcggggtgcacaccgtcgaa
gagctcgtggactacctgcccgaggtcaccaccgcgcagcggcgcaaacggcacctggcc
gccgacctgcccgcgcggcccggtgtgtacctcttccgcggcccgcgtgaggaggtcctc
tacgtcggcaccgcgcgcgacctcaagcggcgcgtgcggcagtacttcacggggtcggag
agccgcgggcgcatccgcgagatggtggcgctggccgagcgcgtggaggccatcgaatgc
gcccactccctcgaggccgagatccgcgagctgcggctcatcgcggcccaccggccgatg
tacaaccggcgctcgaagaacccgcaccacgcctggtggatcgggctcaccgacgaggcc
ttcccgcggctttcggtggtgcggctgccacgcgagggcacactcggcccgttccgcagc
caggccgacgcccgcacggccgccgacacgctcgcgggcgccgccggcctgcgcacctgc
acgatgcgcatctcggcccgcggcggttcggccaccccgtgcgtgctggccgagctgggc
cgctgcggcgcgccgtgcgccggtcgccagagcgtggaggactactccccctccgtcatc
gccgcccgcgacctcatctccggccacgacggcggcccgctgagagtcgccgcggaccag
ctcgaccggctcgcggacggccgccactacgagcaggccgcccgccaccgcgacgagctg
gccgacctcgtgcgcgccgtcggccggtcccaccgccaggccgcgctcgccgccgtcgcc
gagctcatcgccgcccacccggacggcaacggcggctgggagctgtcggtgatccgccac
ggccgcctggcctcggccggtgtcgcccgccgcggggtgccgccgatgccggtggtggac
cagctggtcgccgccgccgaaaccgtgctgcccggcgaagggccgctgcggggcgcgtcg
ggcgaagagatcacggtgctcctgcgctggctggcccgcccgggcgtgcggctcgtgcgc
accacgcggccctgggccgagcccaccgccgtcgccggctggcgcggctggctggacctc
gcggccggtgcgcgcacgctggaacgggtggcggggtga
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