Amycolatopsis rhabdoformis: VSH64_06550
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Entry
VSH64_06550 CDS
T09694
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSH64_06550 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arhd03019
]
VSH64_06550 (groL)
03110 Chaperones and folding catalysts [BR:
arhd03110
]
VSH64_06550 (groL)
03029 Mitochondrial biogenesis [BR:
arhd03029
]
VSH64_06550 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arhd04147
]
VSH64_06550 (groL)
Enzymes [BR:
arhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VSH64_06550 (groL)
Messenger RNA biogenesis [BR:
arhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VSH64_06550 (groL)
Chaperones and folding catalysts [BR:
arhd03110
]
Heat shock proteins
HSP60 / Chaperonin
VSH64_06550 (groL)
Mitochondrial biogenesis [BR:
arhd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VSH64_06550 (groL)
Exosome [BR:
arhd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VSH64_06550 (groL)
Exosomal proteins of other body fluids (saliva and urine)
VSH64_06550 (groL)
Exosomal proteins of breast cancer cells
VSH64_06550 (groL)
Exosomal proteins of colorectal cancer cells
VSH64_06550 (groL)
Exosomal proteins of bladder cancer cells
VSH64_06550 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
WSE31766
LinkDB
All DBs
Position
1417554..1419245
Genome browser
AA seq
563 aa
AA seq
DB search
MAKELRFGSEARDLLVAGVDKLAEAVKSTLGPKGRNVIIEKITGSPVVTNDGVTIAREVH
LSNQFENMGAQLVKEAAIKTNDVVGDGTTTATVIAQAIVGEGMRAIAHGGNPVLVKRGID
AAVGRLVEHLETMAHPVKSEEDYQRVAAISANDDGAVGAVIAKALHTVGEGGVVTIEESQ
RIGMSVDFVEGFEFDNGYLSPYLVTDPGRLEAVLDDPYILMCSEKITNVQQLMPVLDKVM
RNPRPLVLIAETVEGTALSMLVHNHVNRTFQAVAIRAPGFGDRRLHKLEDLAAVVGGAVL
SKHAGFTLETMKLEHLGRAKQVRVTENATQIVGGAGSADDIEFRVSQLRAERERAQFGVD
EDVLTERIGALTGKVAVIRVGAATPAELKELQHRVEDALSATRAAIAEGVVAGGGATLLH
AEKVLTGLDLEGDYAIGAEIVRRALSAPALLIASNAGYAADEIVEQTRKLGDDEGFDALV
GRFGDLVELGIIDPLRVCRSALQNGASVAGLLLTTNSLIAEEQTPWGGSAALMTEFGPLD
GGLHQPSPDASTPQSLGLGPSVG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggaacttcgcttcggctcggaagcccgcgacctgctggtggcgggggtggac
aaactcgcggaggccgtgaagtcgacgctgggccccaaggggcgcaacgtgatcatcgag
aagatcaccggctcgcccgtggtgaccaacgacggcgtgaccatcgcgcgcgaggtccac
ctgagcaaccagttcgagaacatgggtgcgcagctggtgaaggaagcggcgatcaagacc
aacgacgtggtgggcgacggcaccaccacggccacggtgatcgcccaggcgatcgtgggc
gagggcatgcgcgcgatcgcccacggcggcaaccccgtgctcgtgaagcgcggcatcgac
gccgcggtgggccgcctcgtggagcacctggagaccatggcgcacccggtgaagtccgaa
gaggactaccagcgggtggccgcgatctccgcgaacgacgacggcgcggtcggtgccgtg
atcgcgaaggcgctgcacacggtgggggagggcggcgtcgtcacgatcgaggagtcgcag
cgcatcggcatgtcggtggacttcgtggagggcttcgagttcgacaacgggtacctctcg
ccgtacctcgtgacggatcccgggcgcctggaagcggtgctcgacgacccgtacatcctg
atgtgcagcgagaagatcaccaacgtgcagcagctgatgccggtgctggacaaggtgatg
cgcaacccgcgtccgctcgtgctgatcgcggagaccgtggagggcacggcgctgtcgatg
ctcgtgcacaaccacgtgaaccgcacgttccaggccgtcgcgatccgggcgccgggcttc
ggcgaccgccggctgcacaagctcgaggacctcgcggccgtggtcggcggggccgtgctg
tcgaagcacgcgggcttcacgctggagacgatgaagctcgagcacctcggccgggcgaag
caggtgcgggtgaccgagaacgccacccagatcgtgggcggcgcggggtcggccgacgac
atcgagttccgcgtgagccagctgcgggccgagcgcgagcgcgcgcagttcggcgtggac
gaggacgtgctgaccgagcggatcggcgcgctgaccggcaaggtcgcggtgatccgcgtc
ggtgccgcgacgccggccgagctgaaggaactgcagcaccgcgtggaggacgcgctttcg
gccacgcgggccgcgatcgcggagggcgtggtcgccggtggcggcgcgaccctgctgcac
gcggagaaggtgctgaccggcctcgacctcgaaggcgactacgccatcggtgccgagatc
gtgcggcgcgcgctgagcgcaccggcgctgctgatcgccagcaacgccggctacgcggcc
gacgaaatcgtggagcagacccggaaactcggcgacgacgaagggttcgacgcgttggtc
ggccgcttcggcgacctcgtggagctgggcatcatcgacccgctgcgggtgtgccgttcg
gcgttgcagaacggtgcttcggtggccgggctgctgctcaccacgaactcgctgatcgcc
gaggagcagacgccgtggggtggcagtgcggcgctgatgaccgagttcggaccgctcgac
ggaggattgcaccagccctcacccgacgcgagcacaccgcagtcgctcgggctgggcccg
tcggtcggctga
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