Amycolatopsis rhabdoformis: VSH64_09540
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Entry
VSH64_09540 CDS
T09694
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd00630
Glyoxylate and dicarboxylate metabolism
arhd00680
Methane metabolism
arhd01100
Metabolic pathways
arhd01120
Microbial metabolism in diverse environments
arhd01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VSH64_09540 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
VSH64_09540 (fdhF)
Enzymes [BR:
arhd01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
VSH64_09540 (fdhF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
Molybdop_Fe4S4
Fer4_Nqo3
Fer4_10
Fer4_7
Fer4_9
Fer4
Fer4_8
Fer4_21
Fer4_17
Fer4_16
Fer4_6
Fer4_18
Fer4_15
Fer4_22
Fer4_3
Fer4_4
Motif
Other DBs
NCBI-ProteinID:
WSE32344
LinkDB
All DBs
Position
complement(2040073..2043015)
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AA seq
980 aa
AA seq
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MTAVDKPRTAVRTVTATIDGREVTVPEGTSIYNAAQQVGVDIPVLCHNERYDPVGVCRMC
VVDTGGRVFAAACVRPCEDGMTVKTSTPELERNRATLTELLISDQPARAEDPKQTTTGDN
LLLDLADRFDVAHETTELPCGSGRGVDSSNPVINVDHDACILCDRCVRACDDIQGNDVIG
RSGKGYSTKIAFDLNDPMGSSSCVTCGECVQACPTGALTNKPINLIPIQPREQLDAVDSV
CPYCGVGCALTYYVDRERGAIAFAEGRDQPGSKSRLCVKGRYGWDYAASPQRLTTPLIRI
DSSYPKGPLSADVRGDAHNDRGRGGGGGNRSGGKKGRDGRRKPGGLVDYDEVMPHFREAT
WDEALDLIARRLLEIHAAGGPGAIAGFGSAKCSNEEAYLFQKLIRAGFGTNNIDHCTRLC
HASSVAALFEGVGSGAVSTTYSDVANAEIVIITGSNPTANHPVASSFFKQARRRGTKIVY
VDPRANTVAEHADFYCQVKPGTDVAFYNSIMYEVIRLGMIDREFIAERVSNYDELARTVA
DYPPERAAQITGVDADLIRTVARAWGEARAGVIYWGMGISQHTTGTDNARCLIALCSITG
NVGKPGAGLHPLRGQNNVQGASDAGLIPMFYPDYQGVDLDGTRERFEQAWGTKLDPKRGL
TVTEIIGSVLKPGGVRGMYMLGENPFLSDPNINKVRKALGALDFLVVQDIFLTETAEFAD
VILPASSYLEKDGSYTNTDRRVQLGRKVMDPPGQARVDWEIVQDIARRIGLDWNYASPSE
VFDEMVALMPSYKNLRHENLGLSGKLYPNDDPEHTDGTVVLFDERFNTDDGLAHLVPAQW
LPARELPDAEYPLVLNTGRLLEHWHTGSMTRRSFALDSIAPVAEVYVHPKDAADRGLAHG
ERVRVRSRRGEIELQVRISHREQLGNCFIPFHFREAAANLLTIDEIDPYGKIPEFKFCAV
QVEALGVPHTESVSAVGVAE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagtcgacaagccccgtaccgcggtgcgcacggtcacggcgaccatcgacggc
cgtgaggtgaccgtcccggaagggaccagcatctacaacgccgcccagcaggtgggcgtc
gacattccggtgctgtgccacaacgagcgttacgacccggtcggcgtgtgccgcatgtgc
gtggtcgacaccgggggccgggtgttcgccgcggcgtgtgtgcgcccgtgcgaagacggc
atgacggtgaagaccagcaccccggaactggaacgcaaccgcgcgacgttgaccgagctg
ctgatctcggaccagccggcgcgcgccgaggacccgaagcagaccaccaccggcgacaac
ctgctgctggacttggccgaccgcttcgacgtcgcccacgagaccaccgagctgccgtgc
gggtccggccgcggcgtcgacagctccaacccggtcatcaacgtcgaccacgacgcctgc
atcctgtgcgaccgctgcgtgcgcgcgtgcgacgacatccagggcaacgacgtgatcggc
cgctccggcaagggttattcgacgaagatcgcgttcgacctcaacgaccccatgggttcc
agctcgtgcgtcacgtgcggtgaatgcgtgcaggcctgcccgacgggcgcgctgaccaac
aagccgatcaacctcatcccgatccagccccgcgagcaactcgacgcggtggacagcgtg
tgcccctactgcggcgtcggctgcgcgctcacctactacgtggaccgcgagcgcggcgcg
atcgccttcgccgaaggccgcgaccagcccgggtccaagagccggctgtgcgtgaagggc
cgctacggctgggactacgcggcttccccgcagcggctcaccaccccgttgatccgcatc
gattcctcctaccccaagggcccgctctccgccgacgtgcgcggcgacgcccacaacgac
cggggccgcggcggcggaggcggaaaccgcagcggcggcaagaaaggccgcgacggccgg
cgcaagcccggcgggctggtcgactacgacgaggtcatgccgcacttccgcgaggcgacc
tgggacgaggccctggacctgatcgcccgccggctcctggagatccacgcggcgggcggg
ccgggcgcgatcgccggattcgggtcggccaagtgctccaacgaagaggcctacctgttc
cagaaactcatccgggccgggttcggcaccaacaacatcgaccactgcacgcggctgtgc
cacgcgtcctcggtcgcggccctgttcgagggcgtgggttccggtgcggtgtccacgacc
tacagcgacgtcgccaacgccgaaatcgtgatcatcaccggatccaacccgaccgcgaac
cacccggtcgccagctcgttcttcaagcaggcccgccggcgtggcacgaaaatcgtgtac
gtcgacccgcgcgccaacaccgtcgccgagcacgccgacttctactgccaggtcaagccc
ggcaccgacgtcgcgttctacaactcgatcatgtacgaggtgatccggctcgggatgatc
gaccgcgagttcatcgccgagcgcgtgtccaactacgacgagctggcccgcacggtcgcc
gactacccgcccgagcgcgccgcgcagatcaccggcgtggacgccgacctgatccgcacc
gtcgcgcgcgcgtggggcgaggcccgtgccggggtcatctactggggcatgggcatttcg
cagcacaccaccggcaccgacaacgcccgctgcctgatcgcgttgtgctcgatcaccgga
aacgtcgggaagcccggcgcggggctgcacccgttgcgcgggcagaacaacgtgcagggc
gcctccgacgccgggctgatcccgatgttctacccggattaccagggcgtggacctcgac
ggcacccgcgagcggttcgagcaggcctggggcacgaagctcgacccgaagcggggcttg
accgtgaccgagatcatcgggtcggtgctcaagcccggcggggtgcggggcatgtacatg
ctcggggagaacccgttcctgtccgacccgaacatcaacaaggtccgcaaggcactggga
gcgctggacttcctggtggtgcaggacatcttcctcaccgagaccgcggagttcgccgac
gtgatcctgcccgcctcctcctacctggagaaggacggcagctacaccaacaccgaccgg
cgcgtgcagctgggccgcaaggtgatggacccgcccggacaggcgcgggtcgactgggag
atcgtgcaggacatcgcgcggcgcatcggcctggactggaactacgcgtcgccaagcgag
gtgttcgacgaaatggtcgcgttgatgccgtcctacaagaacctgcgccacgagaacctc
ggcctgtcgggcaagctctaccccaacgacgaccccgaacacaccgacggcacggtggtg
ctgttcgacgagcggttcaacaccgacgacggtctcgcgcacctcgtgcccgcgcagtgg
ctgccggcgcgggaactgccggacgcggagtacccgctggtgctcaacaccggccgcttg
ctcgagcactggcacaccgggtcgatgacgcgccggtcgttcgcgctggactcgatcgcc
cccgtcgcggaggtgtacgtgcacccgaaggacgcggccgaccgcggcctcgcgcacggc
gagagggtgcgggtgcgctcgcggcgcggcgagatcgagctgcaggtgcggatttcgcac
cgggagcagctgggcaactgcttcatcccgttccacttccgggaagcggcggcgaacctg
ctcacgatcgacgagatcgacccgtacggcaagatccccgagttcaagttctgcgcggtc
caggtcgaggccctcggtgtgccgcacacggaatccgtttcagcggtgggagtcgcggaa
tga
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