Amycolatopsis rhabdoformis: VSH64_11240
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Entry
VSH64_11240 CDS
T09694
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSH64_11240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_11240
Enzymes [BR:
arhd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VSH64_11240
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VSH64_11240
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSH64_11240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
MycE_N
Motif
Other DBs
NCBI-ProteinID:
WSE32677
LinkDB
All DBs
Position
complement(2392508..2393323)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVESARTVIDRAALGRLIVEVDDTDSYVCRPHPPGQIREALLGRRLTAAHRRGKS
LWCDTGDGGPALGVHLGMSGKIVIADPDGTEIDGGDYWEGRRVQGDYRWSRFSLTFDDGG
LMMLVDPRRLGRITLDPPVELLGPDAASVTPAEFRAAVTKGTAPIKARLLDQHALAGIGN
LLADEILWRARVHPAHPVDELDRPAVDRLLRATRASVTAALDHGGVHTLTVIPFRKPGAA
CPRDHAPMTRGKVGGRTTWWCTAEQLLPHGG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagctgcccgaggtcgaatcggcccgaacggtgatcgaccgggccgcgctcggc
cggctgatcgtcgaggtcgacgacaccgattcctacgtgtgccggccgcacccgcccggg
cagatccgcgaagcgctgctcggccggcggctcaccgcggcgcaccggcggggcaagtcg
ctgtggtgcgacaccggcgacggcggcccggcgctgggcgtgcacctgggcatgtcgggc
aagatcgtgatcgccgacccggacggcaccgagatcgacggcggcgactactgggaaggc
cgccgcgtgcagggcgactaccgctggtcgcggttctccctcacgttcgacgacggcggc
ctgatgatgctcgtcgacccgcgccgcctcggccgcatcacgctcgacccgccggtggag
ctgctcggtcccgacgccgcgtcggtgacccccgccgagttccgcgccgccgtgaccaag
ggcaccgcgccgatcaaggcgcggctgctcgaccagcacgccctggccggcatcggcaac
ctgctcgccgacgagatcctgtggcgcgcccgtgtgcaccccgcccaccccgtggacgag
ctcgaccgccccgccgtggaccgcttgctgcgcgccacccgggcctcggtgaccgcggcg
ctggaccacggcggcgtgcacaccctcacggtgatcccgttccgcaaacccggcgcggcg
tgcccgcgcgaccacgcgccgatgacccgcgggaaggtcggcggccgcaccacctggtgg
tgcaccgcggagcagctgctgccccacggaggctga
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