Amycolatopsis rhabdoformis: VSH64_12270
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Entry
VSH64_12270 CDS
T09694
Name
(GenBank) glycoside hydrolase family 2 TIM barrel-domain containing protein
KO
K01190
beta-galactosidase [EC:
3.2.1.23
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd00052
Galactose metabolism
arhd00511
Other glycan degradation
arhd00600
Sphingolipid metabolism
arhd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
VSH64_12270
09103 Lipid metabolism
00600 Sphingolipid metabolism
VSH64_12270
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
VSH64_12270
Enzymes [BR:
arhd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
VSH64_12270
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_2_C
Bgal_small_N
Glyco_hydro_2_N
LacZ_4
Glyco_hydro_2_N2
Glyco_hydro_2
Motif
Other DBs
NCBI-ProteinID:
WSE32881
LinkDB
All DBs
Position
complement(2623413..2626283)
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AA seq
956 aa
AA seq
DB search
MSSSYVEDPAPGPGSLPPRAAFSSGARSVSLAGTWRFLLSPSPAAAPDGIERDDFDDRGW
TGLTVPGHWQLQGHGNPAYTNVRYPFPVRPPLVPSDNPTGDHRLVFALPDDWPDEPAVLR
FDGVDSCARVWLNGEELGVTRGSRLPTEFAVGPLLRPRGNVLAVRVHQWSSGSYLEDQDM
WWLSGIFRAVTLLSRPVGGVEDYQLHADYDHVSGLGTLSVTAAEGVLLSVPELGVENLPA
GAVTQLAVEPWSAESPRLYHGEVHTAAERVPVRIGFRTVAIEDGVLTVNGRRVLFRGVNR
HEHHPRFGRALPREFALADVLLMKRHNVNAVRTSHYPPDPYFLELCDTHGLWVIDECDLE
THGFGELDWAGNPSDDPRWTEAYLDRMRRTVERDKNHPSIVLWSLGNEAHTGRNLAATAA
WTRERDPSRPVHYEGDFECEYVDVHSRMYADHAEVDRIGRRDDPNERRRSLPFLLCEFAH
AMGNGPGGLLEYRELFERYPHVQGGFVWEWLDHGLARHDEDGREYFAYGGDFGELIHDGN
FVIDGLVHPDRTPSPALAEFAKVFEPVRIGAGAGGVQIENHHDVVGLAHLVFRWSHEHDG
LESSAGSLAVPEVLPGQSVDVPLPPLPPLSTVAGEGVLTVRAELAADTAWASAGHVVAWG
QLPLTTATAAPPAAGTVLVRDSGSLRLGPGVFDADTGRLVALGGHRVEGPRLDLWRAPTD
NDRGSDEPEAGQWRAAGLHRLQHRVAEVDGGGSALVVRTRVAPPGLGFGMLADYHWTADH
DRLRLRVDVEPEGDWPCTLPRLGLRMAVPGALGSVEWFGAGPGEAYADSRQAARIGRFSS
TVDALQTPYVYPQENGNRADARWLRVTSASGAGIRIEGEPVFDFTARRWTSEELDAARHT
VDLVPGELVHLNLDLAQHGLGTASCGPGVLPRYRLHAQKASLTLTFSPITPEGAAR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgtacgtcgaagatcccgctcccggccccggctcgctaccgccccgcgcc
gccttctcctccggcgcgcggtcggtgagcctggccgggacgtggcggttcctcctctcg
ccctcgccggcggcagcgccggacgggatcgagcgcgacgacttcgacgaccgcggctgg
accgggctgaccgtgcccggccactggcagctgcagggccacgggaacccggcctacacc
aacgtgcgctacccgtttcccgtgcggccgccgctcgtgccgtcggacaacccgacgggt
gatcaccggctcgtgttcgccctgccggacgactggccggacgagcccgcggtgctgcgg
ttcgacggcgtcgactcgtgcgcgcgggtgtggctaaacggcgaagagctcggcgtgacc
cgcggcagccggctgccgacggagttcgcggtgggcccgttgctgcgcccgcgtggcaac
gtgctggccgtgcgcgtgcaccagtggtcttcgggcagctacctcgaagaccaggacatg
tggtggctctcgggcattttccgcgcggtcacgctgctttcgcgcccggtcggcggtgtc
gaggactaccaactgcacgcggactacgaccacgtgagcggtctgggcacgctgtcggtc
accgcggcggagggcgtgctgctcagcgtgccggagctcggggtcgaaaacctgccggcc
ggtgcggtcacgcagctcgcggtggagccgtggagcgccgaatcaccgcggctctaccac
ggtgaggtgcacaccgcggccgagcgagtgccggtgcggatcgggttccggaccgtggcg
atcgaggacggcgtgctcacggtgaacggccgccgcgtgttgttccggggcgtgaaccgg
cacgagcaccacccgcggttcgggcgcgcgctgccgcgggagttcgcgctggccgacgtg
ctgctcatgaagcggcacaacgtgaacgcggtgcgcaccagccactacccgcccgacccg
tacttcctggagctgtgcgacacccacgggctgtgggtgatcgacgagtgcgacctcgag
acccacgggttcggcgagctggactgggcgggcaacccgagtgacgacccgcgctggacc
gaggcgtacctcgaccggatgcgccgcaccgtcgagcgcgacaagaaccatccgtcgatc
gtgctgtggtccctcggcaacgaggcgcacaccggccggaacctcgccgcgacggccgcc
tggacccgcgagcgcgacccgtcgcgtccggtgcactacgaaggcgacttcgagtgcgag
tacgtggacgtgcacagccgcatgtacgccgaccacgccgaggtggaccgcatcggccgc
cgcgacgacccgaacgagcgccgccggtcgctgccgttcctgctgtgcgagttcgcccac
gcgatgggcaacgggcccggcgggctgctggagtaccgcgagctgttcgagcgctacccg
cacgtgcagggcgggttcgtgtgggaatggctcgaccacggactcgcgcgccacgacgag
gacggacgcgaatacttcgcgtacggcggcgatttcggcgagctgatccacgacggcaac
ttcgtgatcgacggcctcgtgcaccccgaccgcacgccctcccccgcgctcgcggagttc
gcgaaggtcttcgagccggtgcggatcggtgccggcgcgggcggggtgcagatcgagaac
caccacgacgtcgtcgggctcgcgcacctggtgttccggtggagccacgagcacgacggg
ctcgagagctcggccggttcgctcgccgtgccggaggtccttcccgggcagagcgtcgac
gtgccgctgcccccgctgcccccgctgtccacggtggcgggcgaaggggtgctgaccgtg
cgtgcggagctcgcggcggacaccgcgtgggcgagtgccggccacgtcgtcgcctggggc
cagctgccgctcacgaccgccactgcggcgccaccggctgccgggaccgtgctggtccgg
gacagtggttcgctgcggctcggcccgggtgtgttcgacgcggacaccggccggctggtc
gcgctcggcggccaccgcgtcgagggaccgcggctggacctgtggcgcgcgccgacggac
aacgaccgcgggtccgacgagccggaagccggccagtggcgggcggccgggctgcaccgc
ctgcagcaccgcgtggccgaagtggacggaggtggttcggcactcgtggtgcgcacgcgg
gtcgcgccgccggggctcgggttcggcatgctcgccgactaccactggaccgccgaccac
gaccggctccggctgcgcgtggatgtggaacccgaaggcgactggccgtgcacgctcccg
cggctcggcctgcggatggccgtgcccggtgcgctgggcagcgtcgagtggttcggcgcc
ggccccggcgaggcctacgcggacagccggcaggccgctcggatcggccggttctcctcc
acagtggacgctctgcagacgccgtacgtgtacccgcaggaaaacggcaaccgcgccgac
gcgcgctggctgcgcgtcacgtccgcgagcggcgcggggatccgcatcgaaggcgagccg
gtgttcgacttcaccgcgcggcgctggacgtcggaggagctcgacgccgcgcgccacacc
gtcgacctggtgccgggtgagctcgtgcacctcaacctcgatctggcgcagcacgggctc
ggcaccgcttcgtgcgggcccggcgtgctgccgcgctatcgcctgcacgcccagaaggcg
agcctcacgctcaccttctcccccatcacgcctgaaggagccgcgcgatga
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