Amycolatopsis rhabdoformis: VSH64_14800
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Entry
VSH64_14800 CDS
T09694
Name
(GenBank) SigB/SigF/SigG family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arhd03021
]
VSH64_14800
Transcription machinery [BR:
arhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VSH64_14800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_31
HTH_24
Sigma70_ECF
HTH_Crp_2
HTH_23
HTH_3
MarR_2
HTH_IclR
DUF7343
MarR
HTH_AraC
GerE
KORA
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
WSE33368
LinkDB
All DBs
Position
3275731..3276516
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AA seq
261 aa
AA seq
DB search
MSQQPTTRRRDEYAHTAPLFEEFAALPADDPRRPRLREQLVTEFLPVAEHIATRFTGRGE
PREDLVQVARIGLINAIDRFTPDRGPDFLSFAVPTVMGEIRRHFRDTGWSVRVPRRLKEL
HLALSHGSSTLSQTLGRAPTPTELAEHLGLGVDEVHEGLIAGNAYQTLSVDKPVHDDAEP
LSLADTLGEEDSALEHIENHEALEPLLRELPQRERSILVMRFFGGLTQTQIADRVGISQM
HVSRLLSQTLEQLRGKLTTDP
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
gtgagccagcagccgaccacccggcgccgggacgaatacgcccacacggcgccgctgttc
gaggagttcgcggcgctgcccgccgacgatccgcgccgcccgcgcctgcgcgaacagctc
gtgaccgagttcctcccggtcgccgagcacatcgccacccgcttcaccggccgcggcgag
ccgcgcgaagacctcgtgcaggtggcccgcatcgggctgatcaacgcgatcgaccggttc
acccccgatcgcggcccggacttcctgtccttcgccgtgcccaccgtgatgggcgagatc
cgccgtcacttccgcgacacgggctggtccgtgcgagtgccgcgccggctcaaggaactg
cacctggcgctgagccacggctcgagcacgctgtcgcagaccctgggccgcgcgccgacg
ccgaccgagctcgccgagcacctcggcctcggggtggacgaagtccacgaaggcctgatc
gccggcaacgcctaccagaccctgtcggtcgacaagcccgtgcacgacgacgcggaaccc
ctctcgctcgccgacaccctcggcgaggaggactctgcactcgagcacatcgagaaccac
gaagccctcgaaccgcttctgcgggaactgccccagcgggaacgctcgatcctcgtgatg
cgcttcttcggcggcctcacgcaaacgcagatcgccgaccgcgtgggcatttcccagatg
cacgtttcgcgcctgctgtcacagactctggagcaactccgcggaaaactcaccaccgac
ccgtga
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