Amycolatopsis rhabdoformis: VSH64_20315
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Entry
VSH64_20315 CDS
T09694
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arhd03009
]
VSH64_20315 (rimO)
Enzymes [BR:
arhd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
VSH64_20315 (rimO)
Ribosome biogenesis [BR:
arhd03009
]
Prokaryotic type
ribosomal protein modification factors
VSH64_20315 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
WSE34404
LinkDB
All DBs
Position
complement(4454237..4455685)
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AA seq
482 aa
AA seq
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MPSPTTEPARSRRVSLVTLGCARNEVDSEELAGRLAAGGWELAADPEDSDVVVVNTCGFV
ESAKKDSVDTLLAASDTGRKVVAVGCMAERYGTELAESLPEADAVLGFDHYAELSDRLDD
VVAGRTVASHTPSDRRKLLPISPVQRPAAAEAVEVPGHAQHGWGPRVLRTRLDDSPVAAL
KIASGCDRRCSFCAIPSFRGSFVSRQPDEIVAEAQWLADNGVKELFLVSENSTSYGKDFG
RDGTRALELLLPRLAEIEGIDRVRVSYLQPAETRPQLVKAIATTPGVADYFDLSFQHSSE
QVLRRMRRFGSTDSFLALTEQIREYAPEAGIRTNVIVGFPGETEDDLAELERFLTGARLD
AVGVFGYSDEDGTEAETFDGKLDPAVVTERVTRISALVEELTSQRAEDRIGTFVQVLVEQ
AAEDGDDAVGRAAHQAPEVDGECVILEDPDRAAVEVGDLVRCEVVDSAGVDLIVRPVPDA
DR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgccttctcccaccactgagccagcccgcagccgtcgtgtctccctcgtgaccctgggc
tgcgcccgcaacgaggtcgactccgaggagctggccggacggctcgcggccgggggctgg
gagctggcggcggaccccgaggactccgacgtcgtcgtggtgaacacgtgcggcttcgtg
gagtcggcgaagaaggactcggtcgacacgctgctcgccgcgtccgacaccggccgcaag
gtcgtggccgtcgggtgcatggccgagcgctacggcacggagctggccgagagcctgccc
gaggccgacgccgtgctcggcttcgaccactacgccgagctgtccgaccgcctcgacgac
gtggtggccggccgcacggtcgcgtcgcacacgccgtcggaccggcgcaagctgctgccg
atcagcccggtgcagcggcccgcggccgccgaggccgtggaggtgcccggccacgcccag
cacggctggggcccgcgtgtgctgcgcacccggctcgacgattcgcccgtggccgcgctg
aagatcgcgtcgggctgcgaccggcgctgctcgttctgcgccatcccgtcgttccgcggc
tcgttcgtgtcgcgtcagccggacgagatcgtcgccgaagcgcagtggctcgcggacaac
ggcgtgaaggagctcttcctcgtcagcgagaactcgacctcctacggcaaggacttcggc
cgcgacggcacgcgcgcgctcgagctgctgctgccgcgcctggcggagatcgagggcatc
gaccgcgtgcgcgtgtcctacctgcagccggccgaaacgcgcccgcagctggtgaaggcg
atcgcgaccacgccgggtgtcgccgactacttcgacctgtcgttccagcactcgagcgag
caggtgctgcgccgcatgcgccgcttcgggtccaccgactcgttcctcgcgctcaccgag
cagatccgcgagtacgctccggaagccggcatccgcaccaacgtgatcgtcggcttcccc
ggcgagaccgaggacgacctggcggagctcgagcgcttcctcaccggtgcgcggctcgac
gccgtcggcgtgttcggctactccgacgaggacggcacggaagccgagaccttcgacggg
aagctcgaccccgccgtggtcaccgagcgcgtcacgcggatctcggcgctggtcgaggag
ctcacctcgcagcgggccgaggaccgcatcggcacgttcgtgcaggtgctcgtggaacag
gcggccgaggacggcgacgacgccgtcggtcgcgccgcccaccaggcgcccgaggtcgac
ggcgagtgcgtgatcctcgaggatccggatcgcgcggccgtcgaggtgggcgatctggtg
cgctgtgaggtcgtcgactccgccggggtcgacctgatcgtccgtccggtgccggacgcg
gaccggtga
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