Amycolatopsis rhabdoformis: VSH64_20490
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Entry
VSH64_20490 CDS
T09694
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arhd03016
]
VSH64_20490 (truB)
Enzymes [BR:
arhd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VSH64_20490 (truB)
Transfer RNA biogenesis [BR:
arhd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VSH64_20490 (truB)
Prokaryotic type
VSH64_20490 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
DKCLD
LPP
Motif
Other DBs
NCBI-ProteinID:
WSE34435
UniProt:
A0ABZ1ILR9
LinkDB
All DBs
Position
complement(4490297..4491211)
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AA seq
304 aa
AA seq
DB search
MSRPKEPRRPAPPPGLLIVDKPAGMTSHDVVARARRIMGTRKVGHAGTLDPMATGVLVLG
IERATKLLGHLALDRKTYLATLSLGSSTTTDDAEGEVLTEGDPAVLAKITEEQLAAGVAE
LTGDIQQVPSAVSAVKIDGKRAYARVRAGEDVVLPPRPVTVYRFDVLAIRREDDRIELDA
VVECSSGTYVRALARDLGAGLGVGGHLLALRRTTVGPFTLARARTLEKLEETPELSLDLD
AAVAAAFPRRDVDAAEAQAVRHGRAIPAAGIDGTYGLFAPDGRVLALAADAEGVARSVVV
LLPA
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcgcccgaaagaaccgcgccgccccgctccgccgcccggtctgctcatcgtcgac
aaaccggccggaatgacctcgcacgacgtcgtcgcgagggcgcgccggatcatgggcacc
cgcaaggtcggccacgccggcacgctcgacccgatggccaccggcgtgctcgtgctcggc
atcgagcgcgccaccaagctgctgggccacctggcgctcgaccgcaagacctacctcgcg
acgctctcgctgggcagctccaccaccaccgacgacgccgagggcgaggtgctcaccgag
ggcgacccggccgtgctcgcgaagatcaccgaagagcagctcgcggccggcgtcgccgag
ctcaccggcgacatccagcaggtgccgagtgccgtgagcgccgtgaagatcgacggcaaa
cgcgcgtacgcgcgggtgcgcgcgggggaggacgtggtgctgccgccgcggccggtcacc
gtgtaccgcttcgacgtgctggccatccgccgtgaggacgaccgcatcgagctcgacgcc
gtggtggagtgctcctcgggcacctacgtgcgcgcgctggcccgcgacctcggcgccggg
ctcggcgtcggcggccacctgctcgccctgcggcgtaccaccgtcgggccgttcacgctc
gcccgcgcccgcacgctcgagaagctcgaggagacccccgagctgtcgctggacctcgac
gctgccgtggccgcggccttcccgcgccgcgacgtcgacgcggccgaggcgcaggccgtg
cgccacggccgcgcgatcccggccgccggcatcgacggcacgtacggcctcttcgcgccc
gacggccgcgtgctcgccctggccgccgacgccgagggtgtggcccggtcggtggtggtc
ctgctgcccgcatag
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