Amycolatopsis rhabdoformis: VSH64_26340
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Entry
VSH64_26340 CDS
T09694
Name
(GenBank) ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arhd03016
]
VSH64_26340
Enzymes [BR:
arhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
VSH64_26340
Transfer RNA biogenesis [BR:
arhd03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
VSH64_26340
Prokaryotic type
VSH64_26340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_4
Motif
Other DBs
NCBI-ProteinID:
WSE26400
UniProt:
A0ABZ1HVY7
LinkDB
All DBs
Position
complement(5709237..5710145)
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AA seq
302 aa
AA seq
DB search
MSRRELVVLGSASQTPTRHRNHNGYLLRFDTDGVLFDPGEGTQRQMTHAGVAAAELTRIC
ITHFHGDHSLGLSAVLQRLSLDAVPRPVRCHYPASGQEFFERLRYSTVYHERATVVPAPV
LADDWTDGPISAHPLDHRIDCFGYRYTEPDGVRMLPDRLAAAGLHGPAISRLQREGSVLV
DGRVIRLDEVSERRPGQTVAFVMDTRPCPGALTCARDADLLVAESTFRAADADLATRYGH
LTSTDAGRLAAEAGVRKLVLTHFSQRYPYEDADAFGEEAAAVFDGEIQVARDFDVIPLPR
RR
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgacgtgagctcgtggtgctcgggtcggcgagccagacgccgacccggcaccgc
aaccacaacgggtacctcctgcgtttcgacaccgacggcgtgctgttcgaccccggggag
ggcacgcaacggcagatgacccacgccggcgtggccgccgccgagctcacgcgcatctgc
atcacccacttccacggcgaccacagcctcggcctgtcggcggtgctccagcgcctgtcg
ctcgacgccgtgccgcggcccgtgcgctgccactacccggcctccggccaggagttcttc
gagcgcctccgttactccaccgtctaccacgagcgcgccacagtcgtccccgcgccggtg
ctcgcggacgactggaccgacggcccgatctccgcccacccgctcgaccaccgcatcgac
tgcttcggctaccgctacaccgaacccgacggcgtccgcatgctccccgaccgcctggcc
gcggccggcctccacggccccgccatcagccgcctgcaacgcgagggttcagtgctcgtc
gacggccgcgtcatccgcctcgacgaggtgagcgaacgccgccccggccaaaccgtcgcc
ttcgtcatggacacccgcccctgccccggcgccctcacctgcgcccgcgacgccgacctc
ctggtcgccgaatccaccttccgcgccgccgacgccgacctcgccacccgctacggccac
ctcaccagcaccgacgccggccggctggcggcggaggcgggggtgcggaagctggtgctc
acgcacttctcgcagcggtacccgtacgaggacgcggacgcgttcggggaggaagcggcg
gcggtgttcgacggggagatccaggtggctcgggattttgatgtgatcccgttgcctcgg
cggcggtga
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