Amycolatopsis rhabdoformis: VSH64_27710
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Entry
VSH64_27710 CDS
T09694
Name
(GenBank) RHS repeat-associated core domain-containing protein
Organism
arhd
Amycolatopsis rhabdoformis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TreTu_C
RHS_repeat
DUF6443
SpvB
Motif
Other DBs
NCBI-ProteinID:
WSE26665
LinkDB
All DBs
Position
complement(6049499..6055906)
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AA seq
2135 aa
AA seq
DB search
MRTTAVAVAAIMLASSQEAVASPTGWHGLGWDLPALQAEHSVAGKDVKALSGGALSAPES
APAPAVHWPAAGKVQVDLPATAQGAASPKRVAAGKQVSVTRGHGRDSRTGAYSATAAKAP
QKHAAARVEVTTVDHAVADKAGIRGTLVQVAPVSGDTSGPVEVVVDYRSFAGAYGADFGS
RLRFEQYPACVVSTPEKPECRTGTPVASANDAKTGQLAGEVTLAPMAAASATVLAATPDT
SSGGGDFKATSLAPAGSWTAGTSSGEFNYSYPLSAPAGLGAAAPSVSLQYSSGAVDGLTS
ATNNQASTIGDGWSLGGGGYIERSYKSCGDDLGGNNGQTKTGDLCWATDNATLSLAGRTT
DLVKDTATGTWHLRADDGSRVEKLSGASNGAQGGEHWKLTTVDGTQYFFGLNHLPGWQAG
NPETQSTWTEPVFGNNTNEPCNAATFAASWCQQAWRWNLDYVVDPHGNATTFYYQPETNY
YGLNLNTTSAGTSYVRGGYLLRIEYGFNTRVASVYTHAPDQIVFDTAERCVPGGAVTCDP
AQLTTANAASWPDVPADQICAQGVACPNVSPAFFSRRRITSVSTQVTDGGTGWKTVSQWA
LAQSFPASGDGSSPAMWLDSVTQTGKAGGSISLPPVTFHPKALANRVNPSTDYTALTRNR
IDSVTNEEGGVTTVKYADPQCTPGMTMPAPEANTLACYPVYWTPGGATDPVLDWFNKYLV
TDITEDGRIAGSGGAGSALSQQTVTHYDYLGGGAWHYDENFLSDPKTRTWSMWRGYGTVK
TTVGQATSDPSGPPTVTQTLYLRGMDGDTLPGGGKRSASVTDSLGEVIPDSKALPSFTRE
SLTYLGGTVIGDTINDPWISAPNATDANGLQAVYTGTGTTRTRTWIAATNSWRTTRTINT
FGNYGLVNQVEDDGDIADPNQATCARTTYEPNTTAFLINYVSQVQTTSGTCATAAGSATI
VSDTRSSFDHQPFGAAPTVGDVTQTDTVDSWPAGGAEHFLSPATVTSFDNYGRAVSATDS
LGLTTTTAFTPATGGPLTQVATTTPQVSGTDTTKFTSTRYLDPVTGATTGEVDNSGLRTD
ATYDALGRLTALWPPGHNKGTNAPAKTTYTYTVSNTQPSVVATNTLLSNSQYTTTYALVD
GLGRTVQTQAPTSYAQGGRVVTDTFFDSHGRPWKTHDAYWNGDSGPGTTLLAVADNTVPS
TTVSTFDSAGRATASAYQLYGTEQWRSTTAYDGDRTTTVPPKGGTASSVITNGLGQKVQL
AQYKDPAHTNPGDPADTTSYTYTPDGQLASTTDATGHNTWTTGYDLLGRKASASDPDTGA
SSFTYDNDGRMLSSTDASGRTLAYTYDNLGRKTAEYQDSTSGTKLASWTYDTVLKNKLTS
SSRFAGGKTYTNTVVAYDTAGRVTSSRETIPITETGFGGSYAFSWRYDPLSDVLRSFGSP
AAGGLSSESMLTGYDALDSPTTYQDAGSNGTLLVSETDYNPYGQVLRTNYQDPTLPNQIA
VTHTYADGTNRLATTLAERATSTNFMIANRFYNYDAAGNTTSIADTPQDAPADTQCFSYD
YLQRVTQAFTPTSGNCATTPSVTGIGGAAPYWTSWAYDSTGNRLTQTQHGAAGDTTATST
YPAAGQPQPHAIEALDTTGPNGSTHSDYTYDPAGRTLTQGTGDTRQTFTYDAEGHIATAT
DSSGKVSSYTYDADGNLLFTKDATGTTLTMNDLELFRAIGTSSTVGTRFYAFNGAPVAER
NFKTGLSWSMTDTQNTTYATVDADTLAVTQRRQDPYGVSRGPAPSTWPDKHGYLGGYQNT
TGLTHLGAREYDPTTGRFTTVDPVLNTDSPQQMNGYSYANDNPVGMSDPSGLCPFQPDGA
CRQADGSISGGDACRVGGWSCPDKNSNICGCRDRSVYANHGTPPSGGKQQPGQKARGASG
GAAHHDDDDDGGFWGKVWGVVKDVGEDIYEYSGAKDVVDNCISDFELLGCAKGAVEVGSW
FIPVGAAAHGAEIAAEAGGHLLEGAATTAGRNLVAEGADTAVAEEADMTTVGRWMSPDEH
QAMIDTGQVQAGSNGTSTYVARPASRDAFHKQAPSGSRYVEFDVPTESLRPAGEPGWAQI
PGPKHPIYSKLNAKRGLPPPEMPAFKNLQWDGTVK
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcacgacggcggtcgccgtcgcggcgatcatgctggcgtcgagccaggaagcggtc
gcgtcgccgaccggctggcacgggttgggatgggatctgcccgcactgcaggccgagcat
tcggtggcgggcaaggatgtgaaggcgttgtccggcggtgcgctgtcggctcctgagtcg
gcgcccgctccggcggtgcactggcccgctgcgggcaaagtccaggtggatctgccggcc
accgcgcagggtgctgcgtcgccgaagcgggtggccgcggggaagcaggtgtcggtgact
cgcggccacggccgtgacagccgcaccggtgcctacagtgcgacggcggccaaggcgccg
cagaagcacgcggcggcccgggtcgaggtcaccacggtggatcacgcggtggccgacaag
gccggtatccgcggaaccttggtgcaggtcgccccggtgtcgggtgacacgtcggggccg
gtcgaggtcgttgtggactaccggtcgttcgccggcgcctatggtgctgacttcggtagc
cgactgcggttcgagcagtatccggcctgtgtggtgagcactccggagaagcccgagtgc
cgcaccggaactccggtagcgtcggcaaacgatgccaagaccgggcagcttgccggcgaa
gtgaccctcgctccgatggcagccgcgtcggcgacggtgctcgcggccacgccggacacg
tccagtggcggcggggacttcaaggcgacgagcctcgcgccggccgggtcgtggaccgcc
ggtacttcctcgggtgaattcaactactcctacccgctttcggccccggcgggtctgggt
gcggcggcgccgtcggtgtcgttgcagtactcctcgggcgctgtggacggcctgacgtcg
gcgacgaacaaccaggcgtcgacgatcggtgacggctggtccctcggcggcggagggtac
atcgagcggtcgtacaagtcctgcggcgacgatctcggcggaaacaacggccagaccaag
accggcgacctgtgctgggcgaccgacaacgcgaccctgtcgctggcgggccggacgacc
gacctggtgaaggacaccgccaccggtacctggcacctgcgggccgacgacggttcccgc
gtggagaagctgtccggggcgagcaacggtgcccagggaggcgagcactggaagctgacc
actgtggacggcacccagtacttcttcgggctcaaccacctgccaggctggcaggccggc
aaccccgaaacccagtccacgtggaccgaaccggtcttcggcaacaacaccaacgaaccc
tgcaacgcggccacgttcgccgcgtcgtggtgtcagcaggcgtggcgctggaacctcgac
tacgtggtcgacccgcacggcaacgccacgacgttctactaccagcccgagaccaactac
tacgggctgaacctgaacaccaccagcgccggcacgtcgtacgtgcgcggcggttacctg
ctgcgcatcgagtacggcttcaacacccgggtcgcgagcgtgtacacgcacgcacccgac
cagatcgtgttcgacacggccgaacggtgcgtgcccggcggcgccgtcacctgtgatccg
gcccagctcaccaccgccaacgcggcgtcgtggcccgacgtgcccgccgaccagatctgt
gcccagggcgtggcttgccccaacgtgtcgccggcgttcttctcgcgccgtcggatcacg
tcggtcagcacgcaggtcaccgatggcggcaccggctggaagaccgtgagccagtgggcc
ttggcccagtcgttccccgccagcggcgacgggtccagcccggcgatgtggctggattcg
gtcacccagaccggtaaggccggcggttcgatcagcctgccgccggtgaccttccacccg
aaggccctggcgaaccgcgtcaacccgagcaccgactacaccgcgctgacccgcaaccgg
atcgactccgtcaccaacgaggagggcggcgtcaccacggtcaagtacgccgacccgcaa
tgcacccccggcatgaccatgccggccccggaagcgaacacgctggcctgctacccggtc
tattggactccgggtggtgcgaccgatccggtgctggactggttcaacaagtacctggtc
acggacatcaccgaggacggccgcatcgccggcagcggcggcgccggctcggctctgtcc
cagcagaccgtgacgcactacgactacctcggcggcggtgcctggcactacgacgagaac
ttcctctccgacccgaagactcgcacgtggtcgatgtggcgcggctacggcacggtcaag
acgaccgtcgggcaggccacgagcgatccgtccggacccccgacggtcacccagacgctg
tacctgcgcggcatggacggggacacgctgcccggcggcggtaagcggagcgcgtcggtg
accgacagcctcggcgaagtcatcccggacagcaaggcgctgcccagtttcacccgcgag
tcgctgacctatctcggcggcacggtcatcggcgacacgatcaacgacccgtggatctcc
gcgccgaacgcgacggacgccaacggtttgcaggccgtctacaccggcacgggcaccacc
cggacccgcacgtggatcgccgccaccaacagctggcgcaccactcgcacgatcaacacc
ttcggcaactacgggctggtcaaccaggtcgaagacgacggcgacatcgccgatccgaac
caggccacgtgcgcccgcaccacctacgaaccgaacaccaccgcgttcctgatcaactac
gtgagccaggtccagacgacgtccggcacctgcgccacagccgccggcagcgccacgatc
gtttcggacacccggtcctccttcgaccaccagccgttcggcgccgcgccgacggtcggt
gacgtcacccagaccgacacggtcgattcctggcccgcgggcggtgcggagcacttcctg
tcgccggccaccgtcaccagcttcgacaactacggccgcgcggtgtccgcgaccgactcc
ctgggcctgaccaccaccaccgccttcaccccggccaccggcgggccgctgacccaggtc
gcgaccaccacaccccaggtcagtggcaccgacaccaccaagttcacctcgacccggtac
ctcgacccggtcaccggggcgaccaccggcgaggtcgacaacagcgggctgcgcaccgac
gcgacgtatgacgcgttgggccggctgaccgcgctctggccaccgggacacaacaagggc
accaacgccccggccaaaaccacttacacctacacggtcagcaacacccagcccagcgtc
gtcgccacgaacacgctcctgtccaacagccagtacacgaccacgtacgcgttggtcgac
ggactcggccgcaccgtgcaaacccaggcgccgacctcgtacgcgcaaggcggccgggtc
gtcaccgacaccttcttcgactcccacggccggccgtggaagacgcacgacgcctactgg
aacggcgattccgggccggggacgaccctgctggcggtcgcggacaacacggtgccgagc
accacggtgtccactttcgacagtgccggacgcgcaaccgcgtcggcttatcagctgtac
ggcacggaacagtggcggtccaccaccgcctacgacggtgaccgcaccaccaccgtcccg
ccgaagggcgggaccgccagcagcgtcatcaccaacggcttgggtcagaaagtccagctg
gcgcagtacaaggacccggcccacaccaaccccggcgacccggccgacaccaccagctat
acctacacccccgacggccagctcgcctcgaccaccgacgccaccggtcacaacacgtgg
accaccggttacgacctgctgggccgaaaagcctccgcgtccgacccggacaccggcgcg
agctctttcacctacgacaacgacggccggatgctgtccagcaccgacgccagtggccgc
accctggcctacacctacgacaacctcggccgcaaaaccgccgaataccaggattccacc
agcggaaccaagctcgcgtcgtggacctacgacacggtgctgaagaacaagctcaccagc
tccagccgattcgccggcggcaagacctacaccaacaccgtcgtcgcttacgacacggcg
ggccgggtcaccagttcgcgggagaccattccgatcaccgaaaccgggttcggcggcagc
tacgccttctcctggcgctacgacccgctcagcgacgttctgcggtccttcggcagtccc
gccgcgggtggcctgtccagcgagtcgatgctcaccggctacgacgcgctcgacagcccc
accacttaccaggacgcggggagcaacggcaccctgctggtctccgagaccgactacaac
ccgtacgggcaggtgctgcggaccaactaccaggacccgaccctgcccaaccagatcgcg
gtcacccacacctacgccgacggcaccaaccggctggccacgacgctggccgagcgggcc
acctcgacgaacttcatgatcgccaaccgcttctacaactacgacgcggccggcaacacc
acctccatcgccgacaccccgcaagacgcgccggctgacacgcagtgcttcagctacgac
tacctgcagcgcgtgacgcaggccttcacgcccacgtccggcaactgcgccaccaccccc
agcgtcacgggtatcggcggcgccgcaccgtactggacgtcgtgggcctacgactcgacc
ggcaaccgcctcacccaaacccagcacggcgcggccggcgacaccaccgcgacgtcgacc
taccccgccgccgggcagcctcagccgcacgcgatcgaggcactggacaccaccggcccg
aacggcagcacccactccgactacacctacgacccggccggccgcaccctcacccagggc
accggcgacacgcgccagaccttcacctacgacgccgaaggccacatcgccaccgccacc
gactcgagcggcaaggtctccagctacacctacgacgccgacggcaacctgctgttcacc
aaggacgcgaccggcaccaccctcacgatgaacgacctggagctgttccgcgcgatcggc
acctccagcacggtgggcacgcggttctacgccttcaacggcgcaccggtcgccgagcgc
aacttcaagaccggcctgtcgtggtcgatgaccgacacccagaacaccacctacgccacc
gtcgacgccgacaccctcgccgtcacccaacgccggcaggacccctacggcgtgtcgcgc
ggcccggccccgtccacgtggccggacaagcacggctacctgggcggctaccagaacacg
accggtctgacgcacctcggcgctcgtgagtacgacccgacgacgggccgcttcaccacg
gtcgacccggtgctcaacaccgatagcccgcagcagatgaacggctactcctacgccaac
gacaaccccgtcgggatgtccgacccgtccgggttgtgccccttccaacccgacggcgcc
tgccgccaggccgacggctcgatcagcggcggcgacgcctgccgcgtcggcggctggagc
tgcccggataaaaattcgaacatctgcggctgcagggataggtcggtttacgccaaccac
ggaactcctccctcaggcgggaagcaacagccagggcagaaggctcgcggcgcatcgggc
ggcgcagcgcaccacgacgatgacgacgacggtggtttctgggggaaggtctggggcgtc
gtcaaggacgtcggggaggacatctacgagtactccggcgccaaggacgtcgtagacaac
tgcatcagcgacttcgagctcctcggttgcgccaagggcgccgtcgaagtcggctcatgg
ttcatccccgtcggcgccgccgcccacggtgccgaaatcgccgccgaggccggtggccac
ctgctcgaaggcgcggctaccaccgcaggccgaaacctcgtcgccgagggagccgatact
gcagttgcagaagaagcagatatgactacggtcgggagatggatgtcgccagatgagcac
caggcgatgatcgacactggacaggttcaagcaggtagcaacgggacctctacttatgtg
gcgcgcccagcgagtcgcgacgcctttcacaagcaagccccgtcgggtagtagatatgtc
gaatttgatgtgccaacggagtcgctgcgaccggctggggaaccggggtgggctcaaatc
cctggtccaaagcaccctatttacagcaagcttaatgccaaacgggggttgccgccgcca
gagatgccggcgtttaagaaccttcaatgggatggaactgttaaatga
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