Amycolatopsis rhabdoformis: VSH64_30615
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Entry
VSH64_30615 CDS
T09694
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSH64_30615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_30615
Enzymes [BR:
arhd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
VSH64_30615
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSH64_30615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
WSE27207
LinkDB
All DBs
Position
complement(6674989..6675675)
Genome browser
AA seq
228 aa
AA seq
DB search
MSALTELDDAVIRCRACPRLVAWREQVAATKRAAYADDEYWAKPVPGFGPEDAALAVVGL
APSAHGGNRTGRMFTGDPSGDFLFRVLHEVGLASQPTSTHRGDGVTLRGTRLVSPVRCAP
PENKPTPAERDTCRHWLADELRLLAPTLKAVVVLGAFGWQALLPVLADAGLPVPSPRPAF
AHGTVLELGDLQLHGCYHVSPRNVQTGRVTHAMVCEVFAAAASAAGLF
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgctcaccgagctggacgacgccgtgatccggtgccgcgcgtgcccgcggctg
gtggcctggcgtgagcaggtggccgcgacgaagcgggccgcgtacgccgacgacgagtac
tgggccaagcccgtgcccggcttcggcccggaggacgccgcgctcgccgtggtcggcctc
gcgccctcggcgcacggcggcaaccgcaccggacgcatgttcaccggcgacccgtcgggc
gacttcctgttccgcgtgctgcacgaggtggggctggcgtcgcagccgacgtccacgcac
cgcggcgacggcgtgaccctgcgcggcacccggctcgtgtcgccggtgcgctgcgcgccg
cccgagaacaagccgacgccggccgagcgcgacacctgccgccactggctcgccgacgag
ctgcggctgctggcgcccacgctgaaggcggtggtggtgctcggcgcgttcggctggcag
gcgctgctgccggtgctcgccgacgccggcttgccggtgccttcgccgcggcccgcgttc
gcgcacgggacggtgctcgagctcggtgacttacagctccatggctgctaccacgtgtca
ccccgtaatgtccagactggacgcgtgactcacgcgatggtgtgcgaagtcttcgccgcc
gcggcctcggcggcgggcctcttctga
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