Amycolatopsis rhabdoformis: VSH64_34075
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Entry
VSH64_34075 CDS
T09694
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arhd03016
]
VSH64_34075
Enzymes [BR:
arhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VSH64_34075
Transfer RNA biogenesis [BR:
arhd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VSH64_34075
Prokaryotic type
tRNA splicing ligases
VSH64_34075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WSE27847
UniProt:
A0ABZ1I0C0
LinkDB
All DBs
Position
complement(7390837..7392027)
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AA seq
396 aa
AA seq
DB search
MYTAVDGARVPIRMWADPTSVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLGRLRRRIESAVPVGFGLHKTPVNPAK
VHGVGGWDTFWKSFGALHEGVQGLHDRAARQVGSLGGGNHFIEVCLEQGGADEGRVWVML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMAAYRRDLFWAQDYAARN
RATMVALVKLAVAEVVPGTTFDDAISCHHNYVAEETYDGVDLLVTRKGAIRAGAGDLGII
PGSMGTGSYIVRGLGNRDSFESASHGAGRRMSRTKARKTFTAADLAAQTDGVECRKDTGV
VDEIPAAYKDIDAVIQAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtagacggtgctcgcgtcccgatccggatgtgggccgaccccacgtcg
gtcgaggatcaagccatgcgccagctgcacaacgtcgccaacctgccctgggtgcacggc
gtcgcggtgatgccggacgtccactacggcaagggcgccacggtgggcagtgtcatcgcc
atgcgtgacgcggtgtcgccggcggcggtcggcgtggacatcgggtgtgggatgagcgcg
gtgcgcacgtcgctcaccgcggcggacctgcccgacgacctcggccggctgcggcggcgg
atcgagtcggccgtgccggtggggttcgggctgcacaagacgcccgtgaacccggcgaag
gtccacggcgtgggcggctgggacacgttctggaagtcgttcggcgcgctccacgagggc
gtgcagggtctgcacgaccgcgcggcgcggcaggtcggcagcctcggtggcgggaaccac
ttcatcgaggtctgcctcgagcagggcggtgccgacgagggccgggtgtgggtgatgctg
cattcgggttcgcgcaacatcggcaaggagctcgcggagcggcacatggccgtggcgcgc
aagctgccgcacaacgcggacctgcccgaccgcgacctcgcggtgttcgtcgcgggtacg
ccggagatggcggcctaccggcgtgacctgttctgggcgcaggactacgcggcgcgcaac
cgggccaccatggtggcgctggtgaagctcgccgtcgccgaggtcgtgccgggcaccacg
ttcgacgacgctatctcgtgccaccacaactacgtcgccgaggagacctacgacggcgtc
gacctgctcgtgacccgcaagggcgcgatccgggccggcgcgggtgacctcgggatcatc
ccgggcagcatgggcaccggctcgtacatcgtgcgcgggctcggcaaccgggactcgttc
gaatcggcctcgcacggcgcgggccggcggatgtcgcgcacgaaggcccgcaagacgttc
accgcggccgacctcgccgcccagaccgacggcgtcgagtgccgcaaggacaccggcgtg
gtcgacgagatccccgcggcctacaaggacatcgacgcggtgatccaggcgcagaccgac
ctcgtggaggtcgtggcgcacctgaagcaggtcgtctgcgtgaaggggtga
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