Amycolatopsis rhabdoformis: VSH64_40860
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Entry
VSH64_40860 CDS
T09694
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSH64_40860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arhd03021
]
VSH64_40860
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_40860
Enzymes [BR:
arhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSH64_40860
Transcription machinery [BR:
arhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSH64_40860
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSH64_40860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
WSE29102
LinkDB
All DBs
Position
8800999..8804910
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNAELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLAAEFDVAAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNEKADGAGN
AYSSPAEAIMAFDLKALSLHAPIKIRITDRQPAKADEARLAEAGWEPGKMWLAETTLGRV
LFNDLLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDKLKDAGFYWATRSGVTV
AISDVLVPQGKKAILDEYEGKADQVEKRYQRGQLSHTERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTTRGIMMVVGEDVGDGKVV
PDQHVETSVYARNLATDAVDAKGNVVLNAGDDVGDPAIEKLLSSGITKVKVRSVLTCESA
VGVCATCYGRSMATGELVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDHVNVGQQLLEGTPDPHEVLRVMGPREAQMHLTDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTVIDSGGTDFLPGELPERTKFEARNRSTVSEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDRLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaatttcttcgatgagctccgcatcggtcttgccaccgcagatgacatc
cgtcagtggtcgtacggcgaggtcaagaagccggagaccatcaactaccggactctcaag
cctgagaaggacggtcttttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggtgttccgtcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcctacgtcatcacgggcgtgaac
gcggagctgcgccacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgtgacgcggacatcgaggctcgcgcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggaaggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgccggccgcgagctcgaccgtctcgag
gaggtctggacgaccttcacgaagctcgacacccgccagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggtggcatgggcgcggaggcc
atccagaagctggccgccgagttcgacgtcgccgccgaggccgacaacctgcgcgacacc
attcgcaacggcaagggccagaagaagctgcgcgcactcaagcgcctcaaggtcgtggcc
gccttccaggcgaccggcaacgacccgcgcggcatggtgctcgacgccgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggttgaagcggctcatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctcgcgc
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggccacccggtgatgctgaaccgc
gcaccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcccgcatcctgatgctg
tcggcgaacaacatcctctcgccggcgtcgggccgcccgctcgccatgccgcgtctggac
atggtcacgggtctgttccacctgacgcgcctcaacgagaaggccgacggcgcgggcaac
gcgtactcctcgccggccgaggccatcatggccttcgacctcaaggcgctgagcctgcac
gccccgatcaagatccgcatcaccgaccgccagccggccaaggccgacgaggctcgtctc
gccgaggcgggctgggagccgggcaagatgtggctggccgagacgacgctgggtcgcgtg
ctgttcaacgacctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cgtcaggccgcgatcgtgaacgacctcgccgagcgctactcgatgacgcaggtggcgcag
acgctcgacaagctcaaggacgccggtttctactgggcgacccgctcgggcgtcacggtg
gccatttccgacgtgctcgtgccccagggcaagaaggccatcctcgacgagtacgagggc
aaggccgaccaggtcgagaagcggtaccagcgtggtcagctgtcccacaccgagcgcaac
aacgagctcgtgaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgccatgatcgtgaagtcgggcgcggcgggcaacatg
acgcaggtccggtcgctggccggcatgcgtggcctggtgtcgaacccgaagggtgagtac
atcccgcgcccgatcaaggccaacttccgtgaaggcctgtcggtggcggagtacttcatc
gccacgcacggtgcccgcaagggtctggcggacacggcgctgcgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgaggtcgactgc
ggcaccacgcgcggcatcatgatggtcgtcggcgaggacgtcggcgacggcaaggtcgtt
cccgaccagcacgtggaaaccagcgtgtacgcgcggaacctcgcgacggacgcggtggac
gccaagggcaacgtggtgctcaacgccggtgacgacgtcggcgacccggccatcgagaag
ctgctctccagcggcatcacgaaggtcaaggtccgctcggtcctcacctgtgagtcggcg
gtcggcgtgtgtgcgacctgctacggccgttcgatggcgacgggtgagctcgtcgacgtc
ggcgaggccgtcggcatcgtcgccgcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtcaccgagctcttcgaggctcgcgtgccgaagggcaaggcgccgatcgcggacgtcgac
ggccgcgtgcggatcgaggagagcgagcggttctggaagatcaccctgatcccggacgac
gggtcggaggagatcgtcttcgacaagctgtccaagcggcagcgactcgccaacaccccg
aacggcccgctgggcgacggtgaccacgtcaacgtcgggcagcagctgctcgagggcacg
cccgacccgcacgaggtgctccgcgtgatgggcccgcgtgaggcgcagatgcacctcacc
gacgaggtccagaaggtgtaccgcgcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtcacggtcatcgactcgggtggcacggacttc
ctgccgggcgagctgcccgagcggacgaagttcgaggcgcgcaaccggtcgacggtctcc
gaaggcggcgagccggcttcgggtcgtccggtgctgatgggcatcacgaaggcgtcgctg
accacggactcgtggctgtcggcggcctcgttccaggagaccacgcgagtcctgaccgac
gcggccatcaacggccgttcggaccggctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtacgggcatcaacaagtaccggaacatccaggtgcagcccacc
gaggaggcgcgcgtcgccgcgtacgccatcccgtcctacgacgacggctactacacgccg
gacgtcttcgggtcgggcaccggtgccgccgtgccgctcgacgactacgacttcggccgc
gacttccgctga
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