Amycolatopsis rhabdoformis: VSH64_41070
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Entry
VSH64_41070 CDS
T09694
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSH64_41070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arhd03021
]
VSH64_41070
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_41070
Enzymes [BR:
arhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSH64_41070
Transcription machinery [BR:
arhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSH64_41070
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSH64_41070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
WSE29143
LinkDB
All DBs
Position
8830750..8831823
Genome browser
AA seq
357 aa
AA seq
DB search
MLISQRPALGEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN
PDLHIAALNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLILDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE
ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK
LVGLGLALKDSPPGFDPTAAASSYDGEGWSGSVAGIGGGISDEGHDDGQDYAETEQL
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgctgatttcccagcggccggctctcggcgaagagacggtcaacgagacccgctcccgg
ttcaccatcgaaccgctggagcccggcttcggctacacgctcggcaactcgctgcggcgc
acgctgctgtcgtccattccgggcgcggccgtgacgagcatccgcatcgacggcgtgctg
cacgaattcaccaccgttcccggggtgaaggaagacgtcaccgacatcatcctgaacctc
aaggagctcgtggtgtcctcggaagaggacgagccggtcaccatgtacctgcgcaagcag
ggccccggtgaggtcacggctgccgacatcgtgcctccggccggcgtcaccgtgcacaac
ccggatctccacatcgcggcgctgaacggcaagggcaagctcgagatcgagctcgtcgtc
gagcgcggtcgcggttacgttccggccctgcagaacaagcaggccggcgccgagatcggc
cgcatcccggtcgactcgatctactcgccggtgctgaaggtgacgtacaaggtcgaggcc
actcgtgtcgagcagcgcaccgacttcgacaagctgatcctggacgtcgagaccaagccg
tcgatcacgccgcgcgacgcggttgcctcggcgggcaagacgctggtggagctgttcggt
ctcgctcgcgagctgaacgtcgacgccgagggcatcgagatcggcccgtcgccgcaggaa
gcggacaccatcgccgcctacgcgatgccgatcgaggacctggacctcaccgtccggtcg
tacaactgcctcaagcgcgagggcatccacacggtgggcgagctcgtctcgcgcagcgag
gcggacctgctcgacatccgcaacttcggcgccaagtcgatcgacgaggtcaagctgaag
ctggtcggtctcggcctggcgctcaaggacagcccgcccgggttcgaccccaccgcggcg
gcgtccagctacgacggtgagggctggtcgggaagtgttgccggcatcggcggcgggatt
tcggacgagggccacgacgatggccaggactacgcagagacggaacagctgtaa
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