Amycolatopsis rhabdoformis: VSH64_41555
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Entry
VSH64_41555 CDS
T09694
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03420
Nucleotide excision repair
arhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VSH64_41555 (pcrA)
03430 Mismatch repair
VSH64_41555 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_41555 (pcrA)
Enzymes [BR:
arhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSH64_41555 (pcrA)
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSH64_41555 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
VSH64_41555 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_22
AAA_11
Terminase_6N
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WSE29230
LinkDB
All DBs
Position
8932237..8934663
Genome browser
AA seq
808 aa
AA seq
DB search
MDTLFDLPAEKPAPARKAAAELLEDLNPAQREAVMHAGGPLLVVAGAGSGKTRVLTRRIA
YLLAERGVHPGEIMAITFTNKAAAEMRERVASLVGRRGNAMWVSTFHSMCVRILRREAKT
LDMSSSFSIYDSDDTKRLITLVARDLDIDPKKYAARTLAVHISNLKNELTDPDAAVANAA
NDLERRVAEVYVEYQRRLEAANAFDFDDLIMRTVSLLQAFPDVAEYYRRRFRHILVDEYQ
DTNHAQYTLVRVLAGTESDGATDTGIDPAELVVVGDADQSIYAFRGATIRNIEEFERDFP
NAHTILLEQNYRSTQTILSAANAVIERNPNRRAKRLWTDSGDGEKIVGYVSDNDHDEAAF
VAGEIDALAEKGEADYSDVAVFYRTNNQSRVFEEIFIRLGLPYKVVGGVRFYERREVRDM
LAYLRVLSNPDDTVSLRRILNVPKRGIGDRAEAVVATHAERERITFAAALRDAVEGKVAL
LNPRSAKAITGFVTLLDDLGELAASGSEVHDLLEAVLERTGYRAELEESDDPQDASRVEN
LTELVTVAREFAEFTAEVQQDENAELVLDDGVPAPGSLAAFLERVSLVADADSIPSPDGG
DEGDGGAGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDPHELAEERRLAYVAIT
RARQRLYVSRALVRSAWGQPQMNPASRFLDELPPDLVDWRRLEPSSPGFGNFGSSSGSSS
SGPRAATTWGRRSPSSSSTTSSSPFGKGWKDTVALKLDVGDRVSHDKYGLGTVISCDGVG
PRATATIDFGASGKVRLMLIGSVPMVKL
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggacaccctcttcgatctccccgcagaaaagcccgcgcccgcccgcaaggccgccgcc
gagctgctcgaggacctcaaccccgcgcagcgcgaagcggtcatgcacgccggcgggccg
ctgctcgtcgtcgccggtgcggggtcgggcaagacccgcgtgctcacgcgccgcatcgcg
tacctgttggcggagcggggggtgcaccccggcgagatcatggcgatcacgttcaccaac
aaggccgcggccgagatgcgcgagcgcgtcgcgtcgctcgtcggccgtcgcggcaacgcg
atgtgggtgtccacgttccactcgatgtgcgtgcggatcctgcgccgtgaagccaagacg
ctcgacatgtcgtccagcttctcgatctacgactccgacgacacgaagcggctcatcacg
ctcgtcgcgcgggatctcgacatcgacccgaagaagtacgccgcgcgcacgctcgcggtg
cacatctcgaacctcaagaacgagctcacggaccccgacgcggcggtggccaacgcggcc
aacgacctggagcgccgcgtcgccgaggtgtacgtcgagtaccagcgccggctcgaagcg
gccaacgcgttcgacttcgacgacctgatcatgcgcacggtctcgctgctgcaggcgttc
cccgatgtcgcggagtactaccggcgccgcttccgccacatcctcgtcgacgagtaccag
gacacgaaccacgcgcagtacacgctggtgcgcgtgctggccgggaccgagtctgatgga
gccaccgacaccggcatcgacccggccgagctggtcgtggtgggcgacgcggaccagtcg
atctacgccttccgcggcgccacgatccgcaacatcgaagagttcgagcgcgacttcccc
aacgcgcacaccattctcctggagcagaactaccgctccacgcagacgatcctgtcggcg
gccaacgccgtgatcgagcgcaaccccaaccgccgggcgaagcggctgtggaccgattcg
ggcgacggcgagaagatcgtcggctacgtgtcggacaacgaccacgacgaggccgcgttc
gtcgcgggcgagatcgacgcgttggcggagaagggcgaggccgactactcggacgtcgcc
gtcttctaccgcaccaacaaccagtcgcgcgtgttcgaggaaatcttcatccggctcggc
ctgccgtacaaggtcgtcggcggcgtgcggttctacgagcggcgcgaggtgcgagacatg
ctcgcgtacctgcgggtgctgtcgaacccggacgacacggtttcgttgcggcgcatcctg
aacgtgcccaagcgcggcatcggcgaccgtgccgaagctgtggtggccacgcacgcggag
cgcgagcgcatcaccttcgcggccgcgctgcgcgatgccgtcgagggcaaggtggcgctg
ctgaacccgcgctccgccaaggcgatcaccgggttcgtcacgctgctcgacgacctgggt
gagctggcggcgtcgggttccgaggtgcacgacctgctggaagccgtgctcgagcgcacg
ggttaccgcgcggagctcgaagagtccgacgacccgcaggacgcgtcgcgcgtcgagaac
ctcacggagctcgtcacggtggcgcgcgagttcgcggagttcaccgccgaggtgcagcag
gacgaaaacgccgagctggtgctcgacgacggcgtgcccgcgcccggctcactcgccgcg
ttcctggaacgcgtgtccctggtcgccgacgccgactccatcccgtccccggacggcgga
gacgagggcgacggcggggccggcgttgtcacgctgatgacggtgcacacggccaagggc
ctcgaatacccggtggtgttctgcacgggctgggaagacggcgtcttcccgcacatgcgc
gcgctgggcgatccccacgaactcgcggaggagcggcggctcgcgtacgtggccatcacg
cgcgcacggcagcggctgtacgtctcgcgggcgctggtgcgctcggcgtggggccagccg
cagatgaacccggcttcgcgcttcctcgacgagctgcccccggacctcgtcgactggcgt
cggctggagccttcgtcacccggcttcggcaacttcggctcttcgtcgggctcgtcgtcc
tcgggcccgcgcgcggccaccacatggggccggcgttccccgtcttcctcctccaccacg
tcctcgtcgcccttcggcaagggctggaaggacacggtggccctcaagctcgacgtcggc
gaccgcgtcagccacgacaaatacggcctcggcaccgtcatctcctgcgacggcgtcggt
ccccgcgccacggccaccatcgacttcggcgcgtccggcaaggtccgcctcatgctgatc
ggcagcgtgccgatggtgaagctctga
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