Amycolatopsis rhabdoformis: VSH64_45285
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Entry
VSH64_45285 CDS
T09694
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
arhd03000
]
VSH64_45285
Transcription factors [BR:
arhd03000
]
Prokaryotic type
Helix-turn-helix
Other families
VSH64_45285
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Ortholog
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GFIT
Motif
Pfam:
HTH_8
AAA_lid_14
AAA_16
HTH_30
HTH_50
HTH_20
AAA_22
Sigma54_activat
RWP-RK
UBA
HTH_22
Motif
Other DBs
NCBI-ProteinID:
WSE29931
UniProt:
A0ABZ1I7I0
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Position
9714706..9716328
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AA seq
540 aa
AA seq
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MDRERIGPLRPEIARSWQRLEAVGLSPAALVDPVPADLDPGGALRRAATPVLDDAADKLR
DTAFALVLADHRGRLTDLRFGVPSLEGRMERLGAIPGATFSEDTTGTNSIATTLEEGRPV
AVAGAEHYLESFRDFACYGAPLRSPTTGRIVGVLDLTCSVRDAGALLRPYVDRLARDIDE
RLRDDANGPNHRLLRAFEATSRRSAGPVVAFGEEVTLANRAAADLLRPADQAALRALSED
LAGRTEQRTVELVTGGSIVVRMDKLDGGVLLAVQPKERPVPIPRGRRPVPADSADWHRSL
RAELDRHRDSSVLVTGEAGTGRSAVAASLAEDGGAAVIDGAETSSAELDAAFADGPRTVV
LEHADHLPLRLVPRLARLRGTTRLVLTSGPAVDPDRASLWALCPVRLTLTPLRAERHRIP
ALAEARLREATAGRARFTLGALRVLAAADWPGNLAELAGVVDYVAARRGSGDVTEADLPP
GRRRPDAGPVGGTLWQAERDAIIRALRDCEGNKVHAAERLGISRTALYRRLRVLRIETAR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
gtggacagggaacggatcgggccgctgcgacccgagatcgcccggtcgtggcagcggctc
gaggccgtcggtctttcaccggcagcgctggtcgaccccgtacccgcggacctcgatccc
ggtggggccctgcggcgggccgccaccccggttctcgacgacgccgccgacaagctgcgc
gacaccgccttcgccctcgtcctcgccgaccaccgcggacggttgaccgatctgcgcttc
ggcgttccgtcgctggagggacggatggaacgcctcggtgcgatcccgggcgcgaccttc
agcgaggacaccaccggcaccaattcgatcgccaccaccctcgaggagggccggccggtc
gcggtcgccggtgcggagcactacctggagtcctttcgcgacttcgcctgttacggcgcc
ccgctgcgcagcccgaccacgggccgcatcgtcggcgtgctcgacctgacctgctcggtg
cgcgacgccggtgctctgttgcgcccctacgtcgatcgcctcgcccgtgacatcgacgag
cggctccgggacgacgcgaacggccccaatcaccggctgttgcgcgccttcgaagcgacg
agccgtcgctcggccgggccggtggtcgccttcggcgaagaggtcacgctggccaaccgc
gccgccgccgacctgctgcggccggccgaccaggcggccctgcgggcactgtccgaggat
ctggccggccgcacggagcagcgcacagtggaactggtcaccggcggctcgatcgtcgtc
cggatggacaagctcgacggcggcgtgctgctggctgtgcaaccgaaagagcggcccgtc
ccgattccccgggggcgccggccggtgcccgccgactccgcggactggcaccgatcgctg
cgggcggaactggatcggcaccgcgactcgtccgtgctggtcaccggagaggccggcacg
ggacgcagcgcggtggccgcctcgctcgcggaggacggtggggcggcggtcatcgacgga
gccgaaacgtcgtcggccgaactcgacgccgcgttcgcggacggtccccgcacggtggtg
ctggagcacgcggatcacctgccccttcggctggttccgcggctggcccgcttgcgtggc
accacccggctggtcctgacctcggggccggccgtggaccccgaccgggcttcgttgtgg
gcgctgtgcccggtgcggctcaccttgaccccgctgcgggccgagcgccaccgcatcccg
gccctggcggaggcccggttgcgggaggccaccgccgggcgcgcgcggttcaccctcggc
gcgctgcgggtgctcgccgcggcggattggcccggcaacctcgccgagctggccggggtg
gtcgactacgtggccgcccgccgcgggagcggggacgtgacggaagccgacctgcccccg
ggccgccgccgtccggacgccgggccggtcgggggcacgctctggcaggccgagcgcgac
gcgatcatccgcgcactgcgggattgcgagggcaacaaggtgcacgccgccgagcggctg
ggcatcagccgcaccgcgctgtaccgccggttgcgtgtgctgcgcatcgagaccgctcgc
tga
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