Amycolatopsis rhabdoformis: VSH64_46675
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Entry
VSH64_46675 CDS
T09694
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
arhd
Amycolatopsis rhabdoformis
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhd03032
]
VSH64_46675
03036 Chromosome and associated proteins [BR:
arhd03036
]
VSH64_46675
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_46675
DNA replication proteins [BR:
arhd03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VSH64_46675
Chromosome and associated proteins [BR:
arhd03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
VSH64_46675
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
VSH64_46675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
WSE30197
LinkDB
All DBs
Position
complement(10026762..10027427)
Genome browser
AA seq
221 aa
AA seq
DB search
MANKAQLIEALSERLGDKKVASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA
RNPRTGETVRVKKTNVPAFRAGTTFKDVISGTKKLPKATAVKRTTTTAATTASRTTTARA
TAATGTRAAASRTTATRPATTRSTTTRTRATAAKPAAATKAAAAKPATTRAKAATTKAAA
AKPAAKATTTKAAAAKPAAKPAAKKPAAKPAAKRTSAAKKK
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaggcccagctgatcgaggcgctgtcggagcgtctgggcgacaaaaaggtt
gcttcggaggccgtcgacggtctcgtcgacatcatcatccggacggtcaacaagggcgag
aaggtgaacatcaccgggttcggtgtgttcgagaagcgtgcccgtgccgcccggaccgcg
cgtaacccgcgcacgggtgagacggtgcgggtgaagaagaccaacgtgccggctttccgt
gcgggcacgacgttcaaggacgtcatctccggcacgaagaagctgccgaaggccaccgcg
gtcaagcgcaccaccaccaccgcggccaccacggcctcgcgcaccaccaccgcccgcgcg
accgcggccaccggtacccgcgcggctgcctcgcgcaccacggcgacccgcccggcgacc
acgcgttccaccaccacccgcacccgcgccactgcggcgaagccggccgctgcgaccaag
gctgccgcggccaagccggccactacccgcgccaaggccgccaccaccaaggccgccgcg
gccaagcccgccgcgaaggcgaccaccaccaaggccgctgcggccaagccggccgcgaag
ccggcggcgaagaagcccgccgccaagcccgctgccaagcgcaccagcgccgcgaagaag
aagtaa
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