Amycolatopsis rhizosphaerihabitans: AB5I40_11675
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Entry
AB5I40_11675 CDS
T11563
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
arhi Amycolatopsis rhizosphaerihabitans
Pathway
arhi03030
DNA replication
arhi03430
Mismatch repair
arhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB5I40_11675 (dnaE)
03430 Mismatch repair
AB5I40_11675 (dnaE)
03440 Homologous recombination
AB5I40_11675 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhi03032
]
AB5I40_11675 (dnaE)
03400 DNA repair and recombination proteins [BR:
arhi03400
]
AB5I40_11675 (dnaE)
Enzymes [BR:
arhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB5I40_11675 (dnaE)
DNA replication proteins [BR:
arhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB5I40_11675 (dnaE)
DNA repair and recombination proteins [BR:
arhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB5I40_11675 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Ribosomal_L10
HHH_3
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XEM73778
LinkDB
All DBs
Position
complement(2605430..2608957)
Genome browser
AA seq
1175 aa
AA seq
DB search
MPSFVHLHVHTEYSMLDGAAKIGPLFTEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGI
KPIIGIEAYVAPESRFHKKPVFWGQSNQRGADELGEGGDVSGAGAYTHMTMLAGNATGLR
NLFKLSSLASIQGYYRKPRMDRELIAENAAGIIATTGCPSGEVQTRLRLGQREAAIQAAS
DYKDIFGVGNFFLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHSA
LLCVQAGKTLNDPTRFKFDGDGYFLKSADEMREYWDKEVPGAADNTLLIAERVESYEDVY
THKDRMPVFDVPEGHTEATWLHHEVMGGLSERLPDGVPEEYRERAEYELNVIVDKGFPGY
FLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLFERFLNPERVSMP
DIDMDFDDRRRGEMIRYATGKYGSDRIAQVITFGTIKTKAAIKDSARVHFGQPGYSIADR
ISKALPPPVAAKDIPLAGIVDAKHERYAEAAEVRTLVETDEECKTIFETARGLEGLIRNA
GVHACAVIMSSEPLMDAIPLWRRDDGSIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAI
DNIKANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLLRRMRPTGFEDIVA
VNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETHGLVVYQEQIMQIA
QKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSGEAVQALWDTILPFAGY
AFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYLSECRRLGIKVLPP
DVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSFTEFLDKSELVACN
KRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGGDDKEPASSP
LAHVKFTAEEWPRKQLLAHERDMLGLYVSAHPLDGAEGVLRKHAPRTIAAVIDNPPKEGE
LVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFFAKSYALCAADLVEDNAVLVKGR
VNWREDKMSVFGADLAPLDLTELGETPLVLHTRAEKVTLPVVLELKQTLLAHQGNTPVHL
HVGERRYALDGYSVKVTPALLGEVKTIRGITVGAG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgtttgtccacctgcacgttcacaccgagtattcgatgctggacggtgcggcg
aagatcggtccccttttcacggaggcggcccggttggggatgcccgcggtcgggatgacg
gatcacgggaacatgtacggcggggacgagtttttccagacgtcgaagaagcacgggatc
aagccgatcatcgggatcgaggcgtacgtcgcgccggagtcgcggtttcacaagaagccg
gtgttctgggggcagtcgaaccagcgtggcgcggacgagctgggcgagggcggcgacgtc
tcgggtgcgggcgcgtatacgcacatgacgatgctggcggggaacgcgaccgggttgcgg
aatttgttcaagctgtcgtcgctggcctcgatccagggctattaccgcaagccgcggatg
gatcgtgagctgatcgcggagaacgcggcggggatcatcgcgaccaccggctgcccgtcg
ggcgaggtgcagacgcggttgcggctgggccagcgggaggcggcgatccaggcggcgtcg
gactacaaggacattttcggcgtggggaacttcttcctggagttgatggaccacggtttg
ccgatcgagcggtcggtccgcgagggtctgctggagatcgggaagctgctcgacctgccc
ccgctggccaccaacgactcgcactatgtgaccaaggaccaggcggacacgcactcggcg
ctgctgtgcgtgcaggcgggcaagacgctgaacgacccgacgcggttcaagttcgacggg
gacggttatttcctgaagtcggcggacgagatgcgggagtactgggacaaggaggtcccg
ggcgcggcggacaacacgctgctgatcgcggagcgggtcgagtcgtacgaggacgtgtac
acgcacaaggaccggatgccggtcttcgacgtccccgaaggccacaccgaagccacctgg
ctgcatcacgaggtgatgggcggcctgtccgaaagactgccggacggggtgcccgaagag
taccgggagcgcgctgaatacgaactcaatgtcattgtggacaaaggctttcccggatac
ttcctgatcacggccgacctgatgacgcacgcgcgcgaggcgggaatccgagtagggccg
gggcgtgggtcggcggcggggtcactggtcgcgtacgcgctccgcatcaccaatctcgac
ccgatccggcacggtctgctcttcgaacgcttcctgaatccggaacgagtgtccatgccg
gacatcgacatggacttcgacgaccgccgccgcggcgagatgatccggtacgccaccggg
aaatacggttccgaccggattgcccaggtcatcactttcggtaccatcaaaacgaaagcg
gcgatcaaggattccgcgcgagtccacttcggacaacctgggtactcgatcgcggaccgg
atctccaaagccttgccgccgccggtggccgccaaagacattccgctggcggggatcgtg
gacgccaagcacgagcgttacgcggaggcggccgaggtccgcacgctcgtcgagaccgac
gaagagtgcaagacgatcttcgaaaccgcccgcggcctggaggggctgatccgcaatgcg
ggtgtgcacgcctgcgcggtgatcatgtccagcgagccgttgatggatgcgattccgttg
tggcgcagggacgacggctcgatcatcaccggctgggactatccgtcgtgcgaggccatc
ggcctgctgaagatggacttcctgggcctgcgcaacctcaccgtcatcggcgacgcgatc
gacaacatcaaggccaaccgcggcgaggacatcgacctcgaccggctggccatcgacgat
cccgagaccttcgccctgctggtccgcggtgacagtctcggagtgttccaattggacggc
ggcgcgatgcgggatctgttgcgccgcatgcgtcccaccgggttcgaggacatcgtagcc
gtcaacgcgctctaccggccgggcccgatggcgatgaacacgcacaacaactacgccgac
cgcaagaacaagcgccaagccatcgaaccgatccatccggaactggaggaaccgctgcgc
gagatcctcgccgaaacgcatggtctggtggtgtaccaggaacagatcatgcagatcgcg
cagaaggtcgccggatattcgatgggccgcgcggacgtgctgcgccgcgcgatgggcaag
aagaaaaaggaagtcctggaaaaggaattcgagggcttccgcgccgggatgatcgacaac
gggttctccggcgaggccgtgcaagcgttgtgggacacgattctcccgttcgcgggttat
gcgttcaacaagtcgcacgccgctgggtacgcgctggtcgggtattggactgcctatctc
aaggcgaattacaccgcggagtacatggccgcgttgctgacgtcggtcggtgacaacaag
gacaagtcggcgatctatctgtcggagtgccggcggctggggatcaaggtactgccgccg
gacgtgaacgagtcggctctgcggttcgcggccgtcgggaacgacatccgcttcggtctg
ggcgcagtgcgcaacgtgggcgcgaacgtggtggagtcgatcatcaagacgcgcgaggag
aagggcaagtactcctcgtttaccgagttcctggacaagtcggagctggtggcctgcaac
aagcgggtgatcgagtcgctgatcaaggcgggcgcgttcgattcgatgggccacacgcgg
ctgtcgatgatccaggtgcacgaggacgcggtggaagccgtcgtcccgctcaagcgccag
gaagcgatgggccaattcgacctgttcggcggcgacgacaaagaaccggcttcgtcgccg
ttggcgcacgtgaaattcaccgccgaagagtggccgcgcaagcaattgctggcgcatgaa
cgcgacatgctcgggctttacgtttcagcccatccgctggacggtgccgaaggcgtcctt
cgcaaacacgcgcctcgtacgatcgcggcggtcatcgacaacccgccgaaagaaggcgaa
ctcgtcgtcgccggactgatcacttcgctggagcggcgggtgaacaaaaagggcgaaccg
tgggcgatctgcacggtcgaggatttggacgcgtcgctggaggtgttgttcttcgccaag
tcgtacgcgttgtgcgcggcggatctggtcgaggacaacgcggtgctcgtcaagggccgg
gtgaactggcgggaggacaaaatgtcggtcttcggggcggatctggcaccgctcgacctg
acggaactcggggaaacgccgctggtgctgcacacgcgggcggagaaggtgacgctgcca
gtggtgctggaactcaagcagactttgctggcgcaccaaggaaacacgccggtgcacctg
cacgtgggggagcggcgttacgcgctcgacgggtactcggtcaaggtgaccccggcgctg
ctgggcgaggtgaagacgatccggggaatcaccgtgggcgccggttga
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