Amycolatopsis rhizosphaerihabitans: AB5I40_16010
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Entry
AB5I40_16010 CDS
T11563
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
arhi Amycolatopsis rhizosphaerihabitans
Pathway
arhi03030
DNA replication
arhi03430
Mismatch repair
arhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB5I40_16010 (dnaE)
03430 Mismatch repair
AB5I40_16010 (dnaE)
03440 Homologous recombination
AB5I40_16010 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhi03032
]
AB5I40_16010 (dnaE)
03400 DNA repair and recombination proteins [BR:
arhi03400
]
AB5I40_16010 (dnaE)
Enzymes [BR:
arhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB5I40_16010 (dnaE)
DNA replication proteins [BR:
arhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB5I40_16010 (dnaE)
DNA repair and recombination proteins [BR:
arhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB5I40_16010 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
XEM74595
LinkDB
All DBs
Position
complement(3525013..3528603)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSNDSFVHLHVHTEYSMLDGAAKIGPLFSEAARLGMPAVGMTDHGNMYGGDEFFQTSKKH
GIKPIIGIEAYVAPESRFHKKPVFWGQSNQRGADELGEGGDVSGAGAYTHMTMLAGNATG
LRNLFKLSSLASIQGYYRKPRMDRELISENAAGIIATTGCPSGEVQTRLRLGQREAAIQA
ASDYKDIFGAGNFFLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTH
SALLCVQAGKTLNDPTRFKFDGDGYFLKSADEMREYWDKEVPGAADNTLLIAERVESYED
VYTHKDRMPVFDVPEGHTDASWLRHQVAEGLKWRFPEGIPDGYEERCDYELGVIEGKGFP
SYFLITADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLLFERFLNPERMS
MPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSARVHYGQPGYSIA
DRISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIFDTARGLEGLIR
NAGVHACAVIMSSEPLTDAIPVWQRDDGSIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD
ALENIKVNRGEEIDLDRLGFDDPESYKLLGRGDTLGVFQLDGGAMRDLLRRMLPTGFEDI
IAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSETYGLIVYQEQIMQ
IAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMRSSPLVEGGFSPEAVKALWDT
ILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYLSECRRL
GIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSFTEFLDK
SELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGSFG
ADDGDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERILRKHAP
KPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAALEVLFFAKAYSMF
AADLVEDNAVLVKGRVNWREDKMSVFGGGLVPLDLSEIGNGDEEPPLVLLAAAEKIDQAV
VSELKSTLLAHKGDTPVHLKLVGKNQTVFALYDYPVKVSSMLIGELKGIPGITANT
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaacgattctttcgtccacctgcacgtccacaccgagtattcgatgctggacggt
gcggcgaagatcggtcctttgttctcggaggcggcccggttggggatgcccgcggtcggg
atgactgatcacgggaacatgtacggcggggacgagtttttccagacgtcgaagaagcac
gggatcaagccgatcatcgggattgaggcctacgtcgcgccggagtcgcggtttcacaag
aagccggtgttctgggggcagtcgaaccagcgtggcgcggacgagctgggcgagggcggc
gacgtgtcgggtgcgggcgcgtatacgcacatgacgatgctggcggggaacgcgaccggg
ttgcggaatttgttcaagctgtcgtcgctggcctcgatccagggctattaccgcaagccg
cggatggatcgtgagctgatctcggagaacgcggcggggatcatcgcgacgacggggtgt
ccgtcgggcgaggtgcagacgcggttgcggctggggcagcgggaggcggcgatccaggcg
gcgtcggactacaaggacattttcggggcggggaatttcttcctggagttgatggatcac
ggtttgccgatcgagcggtcggtgcgggagggtctgctggagatcgggaagttgctggac
ctgccgccgttggcgacgaacgactcgcattatgtgacgaaggatcaggcggacacgcac
tcggcgctgttgtgcgtgcaggcgggcaagacgttgaacgatccgacgcggttcaagttc
gacggggacggttatttcctgaagtcggcggacgagatgcgggagtattgggacaaggag
gtcccgggcgcggcggacaacacgctgctgatcgcggagcgcgtggagtcgtatgaggac
gtgtacacgcacaaggaccggatgccggtcttcgacgtccccgaaggccacaccgatgct
tcctggctgcgccatcaggtggccgagggtctcaagtggcggttccccgaaggcatcccg
gacggctacgaggagcgctgcgactacgaactcggcgtcatcgagggcaagggcttcccg
tcctacttcctcatcaccgccgacctcatccagcacgcgcgggaggtcggcatcctggtc
ggccccggccgtggttccgcggcgggcgcgctggtcgcgtacgcgctgggcatcacgaac
ctcgacccgatcccgcagaagctgctgttcgagcggttcctgaacccggagcgcatgtcg
atgcccgatatcgacatcgacttcgacgaccgccggcgcggcgagatgatccggtacgcc
accgacaagtacggcgcggaccgggtcgcccaggtgatcaccttcggcaccattaagacc
aaggcggcgatcaaggactccgcccgcgtgcactacggccagccgggctactcgatcgcg
gaccggatttcgaaggcgctgccgccgccgatcatggcgaaggacatcccgctgtcgggc
atcgtcgactcgaagcacgagcgctacgccgaggccgccgaggtccgcacgctggtcgag
accgacgaagagtgcaagacgatcttcgacaccgcccgcggcctcgaaggcctgatccgc
aacgcgggcgtgcacgcctgcgcggtgatcatgtcgagcgaaccgctcaccgacgcgatc
ccggtgtggcagcgcgacgacggctccatcatcaccggctgggactatccgtcgtgcgag
gccatcggcctgctgaagatggacttcctgggcctgcgcaacctcaccgtcatcggcgac
gccctggagaacatcaaggtcaaccgcggcgaggagatcgacctcgaccggctcggcttc
gacgatcccgagtcgtacaagctcctcggccgcggcgacacgctcggcgtgttccagctc
gacggcggcgcgatgcgcgacctgctgcggcgcatgctgccgaccgggttcgaggacatc
atcgcggtgctcgcgctgtaccgccccggcccgatgggcatgaacgcgcacaacgactac
gccgaccgcaagaacaaccggcagcagatcaagcccatccacccgcagctggaggaaccg
ctgcgggagatcctgtccgagacctacggcctgatcgtctaccaagagcagatcatgcag
atcgcccagaaggtcgcgggctacacgatgggccgagcggacacgctccgccgcgcgatg
ggcaagaagaagaaggaagtcctcgaaaaggagtacgagggcttcgaagagggcatgcgg
tccagcccgctcgtcgagggcggcttctcgccggaagcggtcaaggcgctgtgggacacg
attctcccgttcgccgggtacgcgttcaacaagtcgcacgccgccgcgtacggcctgatc
gcgtactggaccgcgtacctcaaggcgaactacaccgcggagtacatggccgcgctgctg
acgtcggtgggtgacaacaaggacaagtcggcgatctatctgtcggagtgccgacggctg
gggatcaaggtattgccgccggacgtgaacgagtcggcgttgcggttcgcggccgtcggg
aacgacatccgcttcggtctgggcgcggtgcgcaacgtgggcgcgaacgtggtggagtcg
atcatcaagacgcgcgaggagaagggcaagtactcctcgttcaccgagttcctggacaag
tcggagctggtggcctgcaacaagcgggtgatcgagtcgctgatcaaggcgggcgcgttc
gattcgatgggtcacacgcggctgtcgatgatccaggtgcacgaggacgcggtggaagcc
gtcgtcccgctcaagcgccaggaagcgatgggccaattcgacctgttcggctcgttcgga
gccgacgacggcgacgcggccgaggctgctccgtcctcctcgccgctcgcgcacctcaag
ttcggcgaagaggagtacccgcgcaagcagctcctcgcctacgagcgcgaaatgctaggc
ctgtacgtttcggcgcacccgctcgacggggcggagcgcatcctccgcaaacacgccccg
aagccgatcgccgcgctgctcgccgacccgccgaaggagggcgaggtcgtcatctccggc
ctgctcacctcgctcgaacgccgggtcaacaagaagggcgagccctgggcgatctgcacc
gtcgaggacatggacgccgcgctcgaggtgctgttcttcgccaaggcgtactcgatgttc
gccgcggatctggtcgaggacaacgcggtgctggtgaagggccgggtcaactggcgcgag
gacaagatgtcggtgttcggcggcgggctcgtgccgctggacctgtccgagatcggcaac
ggcgacgaggaaccgccgctggtgctgctggccgccgcggagaagatcgaccaggcggtg
gtcagcgaactgaagtcgacgctgctggcgcacaagggcgatacgccggtgcacctcaag
ctcgtcggcaagaaccagacggtcttcgcgctttacgattacccggtgaaggtcagttcg
atgctcatcggtgagctcaagggcatccctgggatcaccgccaacacatga
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