Amycolatopsis rhizosphaerihabitans: AB5I40_29280
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Entry
AB5I40_29280 CDS
T11563
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arhi Amycolatopsis rhizosphaerihabitans
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arhi03016
]
AB5I40_29280
Enzymes [BR:
arhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB5I40_29280
Transfer RNA biogenesis [BR:
arhi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB5I40_29280
Prokaryotic type
tRNA splicing ligases
AB5I40_29280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XEM68530
LinkDB
All DBs
Position
6288260..6289450
Genome browser
AA seq
396 aa
AA seq
DB search
MYTAVDGERVPIRMWADPASVEDQAMRQLRNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGKLRKRIESAVPVGFGLHKTPVNTAK
VHGVGGWDTFWKSFGDLHEGVQDLADRAARQIGSLGGGNHFIEVCLEQGGADEGRVWLML
HSGSRNIGKELAERHMAIARKLPHNRDLPDPDLSVFVANTPEMRAYRRDLFWAQDYAARN
RATMIALVKLAVAEVIPGTSFDDAVSCHHNYVAEETYDGVDLLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNTASFESASHGAGRRMSRTKARKTFTAADLVAQTEGVECRKDTGV
VDEIPSAYKDIETVIKAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcagtggacggcgagcgggttccgatccggatgtgggcagaccccgcgtcg
gtcgaagaccaagcgatgcgtcagctgcgcaacgtcgccaaccttccgtgggtgcacggc
gtcgcggtgatgcccgacgtccactacggcaagggcgcgacggtgggcagtgtcatcgcc
atgcgcgacgccgtctcgcctgccgcggtcggcgtcgacatcggctgcgggatgagcgcg
gtgcggacgtcgctcaccgcgagcgacctgccggacgacctcggcaagctgcgcaagcgg
atcgaatcggcggtgccggtcgggttcgggctgcacaagacgccggtcaacaccgcgaag
gtgcacggcgtcggcggttgggacacgttctggaagtcgttcggcgatctgcacgagggc
gtccaggacctggccgaccgggcggcgcggcagatcggcagcctcggcggcggcaaccat
ttcatcgaggtctgcctcgaacagggcggagccgacgagggccgcgtgtggctgatgctg
cattcgggttcgcgcaacatcggcaaggaactcgctgagcggcacatggcgatcgcgcgg
aaactgccgcacaaccgggatctgccggatcccgatctgtcggtgttcgtcgcgaacaca
ccggaaatgcgggcgtaccggcgcgatctgttctgggcgcaggactacgcggcacggaac
cgggcgacgatgatcgcgctggtgaagctcgcggtcgcggaggtcatcccgggcaccagt
ttcgacgacgcggtttcgtgccatcacaactatgtcgccgaggaaacctacgacggcgtc
gacctgctcgtcacccgcaagggcgcgatccgcgccggctccggcgatctcgggatcatc
ccgggcagcatgggaaccggctcgtacatcgtgcgcggactcggcaacaccgcgtcgttc
gaatccgcgtcccacggcgccgggcggcggatgtcgcggacgaaggcccgcaagacgttc
accgccgccgacctcgtcgcgcagaccgagggcgtggaatgccggaaggacaccggggtc
gtcgacgagatcccgtccgcgtacaaggacatcgagacggtgatcaaggcacagaccgac
ctggtcgaggtggtcgcgcacctcaagcaggtcgtgtgcgtgaagggttga
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