Amycolatopsis rhizosphaerihabitans: AB5I40_35980
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Entry
AB5I40_35980 CDS
T11563
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
arhi Amycolatopsis rhizosphaerihabitans
Pathway
arhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB5I40_35980 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arhi03021
]
AB5I40_35980 (rho)
03019 Messenger RNA biogenesis [BR:
arhi03019
]
AB5I40_35980 (rho)
Transcription machinery [BR:
arhi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB5I40_35980 (rho)
Messenger RNA biogenesis [BR:
arhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB5I40_35980 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XEM69784
LinkDB
All DBs
Position
7662728..7664758
Genome browser
AA seq
676 aa
AA seq
DB search
MSNTDLLSGDVETPAAAAETNGAAAAPKRRTGGLSGMVIAELRQLAGELGVGETTGMRKG
DLIAAIRERQGKSKKRAAATAETLPLDGVGEPVKAEKAEKPARRAKADAPKADAPQAEPK
AEPVQAEAPKAEAPKAETAQDGKPAAQERPERHDRSEGQQSDGQSEEGGRNRRRRGGANR
GDGQRGDRQGGNRDNNRDNRDSRDNGGRDNRENNRDNRGGDNRQDNRDNRGGQDNRQDRD
NRQRNQQDNRDNRNNGPQDDDEEGGRRGRRFRDRRRRGSGGGQREGGAPDTEIREDDVLL
PVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKFGLRRGDAITGVVRQPREGEQQRQ
KFNPLVRVDSINGLEPDEAKRRPDFTKLTPLYPNERLRLETEPHKLTTRVIDLIMPVGKG
QRALIVSPPKAGKTTIMQDIANAITTNNPEAHLMVVLVDERPEEVTDMQRSVKGEVIAST
FDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDS
TALYPPKRFLGAARNIENGGSLTIFATAMVETGSTMDTVIFEEFKGTGNAELKLDRKISE
RRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDLLISRLRKTKTNIE
FLMQVSKTALGGGDDD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatctgttgagcggcgacgtggagacccccgccgcggccgctgagacc
aatggggccgcggccgctccgaagcgccgcaccgggggcctgtccggaatggtcatcgcc
gagctccgccagctggcgggcgaactgggtgtgggcgagaccaccggcatgcgcaagggg
gacctgatcgccgcgatccgcgagcgccagggcaagagcaagaagcgcgccgccgcgacg
gccgagacgctgccgctcgacggcgtcggcgagccggtcaaggcggagaaggccgagaag
cccgcccgccgggccaaggccgacgcgccgaaggcggacgctccccaggcggagccgaag
gccgagccggtgcaggcggaggctcccaaggccgaggccccgaaggcggagaccgcgcag
gacggcaagcccgccgcgcaggagcgcccggagcgccacgaccgttccgagggccagcag
tccgacggccagtccgaggaaggcggccgcaaccgccgtcgtcgcggcggcgcgaaccgg
ggcgacggccagcgcggcgaccgccagggcggcaaccgcgacaacaaccgggacaaccgc
gacagccgggacaacggcggccgcgacaaccgggagaacaaccgcgacaatcgcggcggc
gacaaccggcaggacaaccgcgacaaccgcggcggtcaggacaaccggcaggaccgcgac
aaccggcagcggaaccagcaggacaaccgcgacaaccggaacaacggcccgcaggacgac
gacgaggaaggcggccgccgcggccgtcgcttccgcgaccgtcgccgccggggcagcggt
ggcggccagcgcgagggcggcgcgccggacaccgagatccgcgaggacgacgtcctgctg
ccggtcgccggcatcctggacgtgctcgacaactacgcgttcgtgcgcacctcgggctac
ctcgccgggccgaacgacgtgtacgtgtcgctgtcgctggtccgcaagttcggcctgcgc
cgcggcgacgcgatcaccggtgtcgtgcgccagccgcgcgagggcgagcagcagcggcag
aagttcaacccgctggtgcgcgtcgactcgatcaacggcctggagccggacgaggccaag
cgccgtcccgacttcaccaagctgaccccgctgtacccgaacgagcggctgcgcctcgag
accgagccgcacaagctcaccacccgtgtgatcgacctgatcatgccggtcggcaagggc
cagcgagcgctgatcgtgtccccgcccaaggccggtaagaccacgatcatgcaggacatc
gcgaacgcgatcaccacgaacaaccctgaggcccacctcatggtcgtgctggtcgacgag
cgcccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatcgcctccacc
ttcgaccgcccgccgtccgaccacacctcggtcgccgagctgtccatcgaacgggccaag
cgcctggtcgaaatgggtcacgacgtggtcgtcctgctcgactcgatcacccgtctcggc
cgggcctacaacctggccgcgcccgcgtcgggccggatcctgtccggtggtgtcgactcg
accgcgctgtacccgccgaagcgtttcctcggcgccgcgcgcaacatcgagaacggcggc
tcgctcaccatcttcgcgaccgcgatggtggagaccgggtccacgatggacacggtgatc
ttcgaggagttcaagggcaccggcaacgcggagctcaagctggaccgcaagatctccgag
cgccgcgtgttcccggcggtcgacgtcaacccgtccggcacccgcaaggaagagctgctg
ctctcgccggacgagctggcggtcacgcacaagctgcaccgcgtgctgcacgcgctggac
tcgcagcaggccatcgacctgctgatctcgcgcctgcgcaagacgaagaccaacatcgaa
ttcctgatgcaggtctcgaagaccgcgctcggcggcggagacgacgactga
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