Amycolatopsis rhizosphaerihabitans: AB5I40_39580
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Entry
AB5I40_39580 CDS
T11563
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arhi Amycolatopsis rhizosphaerihabitans
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arhi03019
]
AB5I40_39580 (hrpA)
Enzymes [BR:
arhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB5I40_39580 (hrpA)
Messenger RNA biogenesis [BR:
arhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB5I40_39580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
NACHT
nSTAND_NTPase5
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_16
AAA_25
AAA_30
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
XEM70476
LinkDB
All DBs
Position
8448230..8452105
Genome browser
AA seq
1291 aa
AA seq
DB search
MSTPSPFAELRAQLPELMLRDEYRLRRRLDGARRSRAKQETAERIAADVETALLRVQQRR
ESVPKIEYPAELPVSRLKDEIGDAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVRGQI
GHTQPRRLAARTVADRIASELKTELGDTVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTD
RMLRQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPERFSRHFDDAP
IVEVSGRTYPVEVRYRPLVDPDEPEGDPDRDQTQAIAEAVQELSGEAPGDILVFLSGERE
IRDTADVLNRLDLRNTEVLPLYARLSAADQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEAVSQASANQRKGRCGRTSDGICIRLYSEEDFESRPE
FTDPEILRTNLASVILQMTSLGLGDMNAFPFVEPPDRRQVTDGVQLLQELGAFETGDSSK
LTEVGRKLALLPVDPRMGRMVLEAARNGCVREVMIIAAALSIQDPRERPAEKQQAADAQH
SRFADPTSDFLSYLKLWEYVSEQQKTLTGNQFRRMCRTEYLNYLRIREWQDIFGQLRQLA
KPLGITLSTTPAEPQHVHTALISGLLSHIGLKDPAKGDYLGARGARFSVFPGSALFKKQP
RWVMSAELVETSRLWGRVNARIEPDWVEPLAQHVVKRSYSEPHWERKQGAVMATEKVTLY
GVPLIADRRVNYGRIDPEISRAMFIRHALVEGDWHTNHRFFAENRALLDEVEDLENRARR
RDILVDDQTLYEFYDARVPEDVVSVRHFDSWWKKARRNEPDLLSFEKSMLINEVAGAVRE
SDYPDSWTQGTHVFKLTYQFEPGADADGVTVHIPLPVLNQITPDGFDWQVPGLRGDLATQ
LIKSLPKTLRRNFVPAPDTAADALTRMSPSDGPLLDILGDELHAMRGIDVPHSAWDLSTV
PDHLRITFRVVDERGKRVAEGKDLDELKRRLAPRVRETISKAANSIEKAGLVQPSFGELP
KVFASTRRGHDVKAYPALVDEGASVAVRLLDTPAEQQHAMWSGTRRMLRLNLNSPMKFIT
RSLSNSSKLVLNRNPHGSVAGLLEDCVDCAVDALMASAGGPVWDEAGFAALLERVRAGLN
PKVLEVLTEVERILRAAIDVETRLADTRGPAESLADIRRQLDGLVHKGFVTETGAGRLSN
VVRYLRGIERRLEKLPLEQTRDLQRMADVAWITKEYQDALAALPPGTSSPALAEVRWMIE
ELRVSFFAQTLGTAHPVSLKRITKALDDALA
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccatcccccttcgcagagctgcgcgcccagctgcccgaactgatgctgcgc
gacgagtaccggctccgtcgtcgtctcgacggcgcacgccggtctcgtgccaagcaggag
acggccgagcgcatcgccgccgatgtcgaaacggcgctgctgcgcgtgcagcagcgccgc
gaaagcgtgccgaagatcgagtaccccgccgagctgccggtcagcaggctcaaggacgag
atcggcgacgcgatccgcgaccaccaggtggtgatcgtcgcgggggagaccggttcgggc
aagaccacgcagctgccgaagatctgcctggagctgggtcgcggcgtgcgcgggcagatc
gggcacacccagccgcgccggctcgccgcgcgcacggtcgccgaccggatcgccagcgag
ctgaagaccgaactgggcgacaccgtcggctacaaggtccggttcaccgatcagtccggc
caggacaccctggtcaagctgatgaccgacggcatcctgctggccgagatccagaccgac
cggatgctgcgccagtacgacacgctgatcatcgacgaggcgcacgagcgcagcctcaac
atcgacttcatcctcggctacctcaggcagctgctgccgcgccgtcccgacctgaaggtg
atcatcacctcggcgaccatcgacccggagcggttctcgcggcatttcgacgacgcgccg
atcgtcgaggtctccggccggacttacccggtcgaggtgcgctaccgcccgctcgtggac
ccggacgagcccgagggcgacccggaccgcgaccagacgcaggcgatcgccgaggcggtg
caggagctgtccggcgaggcgccgggcgacatcctcgtgttcctttccggcgagcgcgaa
atccgcgacaccgcggacgtgctgaaccggctggacctgcggaacaccgaggtgctgccg
ctgtacgcgcggctctccgcggccgatcagcaccgcgtgttccagcggcacaccggacgc
aggatcgtgctggccacgaacgtcgccgagacgtcgctgaccgtgcccgggatcaagtac
gtgatcgacccgggcaccgcgcgcatctcgcgctacagccaccgcacgaaggtgcagcgg
ctgccgatcgaggcggtctcgcaggcgtcggccaaccagcgcaaggggcgttgcgggcgt
acctccgacggcatctgcatccggctgtactccgaggaagacttcgaatcgcggccggag
ttcaccgatccggagattctgcggacgaacctggcgtcggtcatcctgcagatgacgtcg
ctcgggctcggcgacatgaacgcgttcccgttcgtggagccgccggaccgccgccaggtc
accgacggcgtgcagctgctgcaggaactcggcgcgttcgagaccggcgattcctcgaag
ctcaccgaggtcggccgcaagctcgcgctgctgccggtggacccgcggatgggccggatg
gtgctggaggccgcgcggaacggctgcgtgcgcgaggtgatgatcatcgccgccgcactg
tccattcaggacccgcgcgagcggccggcggagaagcagcaggccgccgacgcgcagcac
tcccggttcgcggacccgacgtcggacttcctctcctacctcaagctgtgggagtacgtc
agcgaacagcagaagacgttgaccggcaaccagttccgccggatgtgccgcaccgaatac
ctgaactacctgcggatccgcgagtggcaggacattttcggccagctgcgccagctcgcc
aaaccgctcggcatcacgctcagcaccacgcccgccgaaccgcagcacgtgcacacggcg
ctgatttccgggctgctgtcgcacatcgggctcaaggacccggcgaagggcgactacctc
ggcgcccgcggggcccggttctcggtgttccccggttcggcgctgttcaagaagcagccg
cgctgggtgatgtcggccgagctggtcgagacgtcgcggctgtggggccgggtcaacgcg
cggatcgagccggactgggtcgaaccgctggcgcagcacgtggtgaagcgttcgtactcg
gagccgcactgggagcgcaagcagggcgcggtgatggcgaccgagaaggtgacgctgtac
ggcgtgccgcttatcgcggaccggcgggtgaactacggccggatcgacccggagatctcg
cgcgcgatgttcatccggcacgcgctcgtcgaaggcgattggcacacgaaccaccggttc
ttcgccgagaaccgcgcgctgctcgacgaggtcgaggatctggagaatcgtgcccggcgg
cgcgacatcctggtggacgaccagacgctgtacgagttctacgacgcgcgagtgcctgag
gacgtcgtgtccgtgcggcacttcgacagctggtggaagaaggcgcggcggaacgagccg
gacctgctgtcgttcgagaagtccatgctcatcaacgaggtcgcgggcgcggtccgcgaa
tcggactacccggactcgtggacgcagggcacgcacgtcttcaagctgacctaccagttc
gaacccggagcggacgccgacggcgtgaccgtgcacatcccgctgccggtgctgaaccag
atcacgccggacggcttcgactggcaggtgcccggcctgcgcggcgatctggcgacgcag
ctgatcaaatcgctgccgaaaacgttgcggcgcaacttcgttcccgctcccgacaccgcc
gctgacgcgttgacgcgaatgtccccttcggacggtccgctgctcgacatcctcggcgac
gaactgcacgcgatgcgcggcatcgacgtcccgcattcggcgtgggacctctcgacggtg
ccggaccacctccggatcaccttccgcgtggtggacgagcgcggcaagcgggtggcagag
ggcaaggacctggacgagctgaagcgccgtctcgcgccgcgggtgcgggagactatttcc
aaggctgccaacagcattgagaaggccggtctggtgcagccgtcgttcggcgagctgccg
aaggtcttcgcttcgacccggcgcggccacgacgtgaaggcgtatccggcgctggtggac
gagggcgcgtcggtggccgtgcggctgctggacacgcccgccgaacagcaacacgcgatg
tggtccggcacgcggcgaatgctgcggctgaacctgaactcgccgatgaagttcattacg
cggtcgctgtcgaactcctcgaagctcgtgctgaaccgcaatccgcacggcagtgtcgcg
ggcttgctggaggattgcgtcgactgcgccgtcgacgcactgatggcttctgcgggcggc
ccggtctgggacgaggcgggtttcgccgcgctgctggaaagggtgcgtgcgggcttgaac
ccgaaggtgctggaggtgttgacggaggtcgagcggatcctgcgcgcggccatcgacgtc
gaaacgcgcctggcggacacccgcggcccggccgagtcgctggcggacatccgtcgtcag
ctggatggcttggtgcacaagggcttcgtgacggaaacgggtgccggacggctgtcgaac
gtggtccggtacctgcgcggcatcgagcggcgactggagaaactgccgctggagcagacg
cgggacttgcagcggatggccgacgtcgcgtggatcacgaaggaataccaggacgcgttg
gctgctttgccgcccgggacgtcttcgcccgcgctggcggaggtgcggtggatgatcgag
gagcttcgggtgagcttcttcgcgcagacattggggacggcgcatccggtttcgctgaag
cgaatcaccaaggcgttggacgacgcgctggcctga
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