Psychromicrobium lacuslunae: UM93_00790
Help
Entry
UM93_00790 CDS
T03775
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ari
Psychromicrobium lacuslunae
Pathway
ari03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UM93_00790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ari03400
]
UM93_00790
Enzymes [BR:
ari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UM93_00790
DNA repair and recombination proteins [BR:
ari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UM93_00790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AJT40450
UniProt:
A0A0D4BWE5
LinkDB
All DBs
Position
169194..172808
Genome browser
AA seq
1204 aa
AA seq
DB search
MGLNGLRASLRDDSSVTRVRQQAEQPHAQRSEDLQIGAPNGLRAPLLAEIAEGMATAVAP
TDRSSVVLAITATSRESEDLTEALRAYLPADSVIDFPSWETLPHERLSPRSDTVGRRLAV
LRRLKHGAAGQGELRVVVAPIRAVVQPIVAGLGDLEPVELTVGQLIAFDEVVQRLAAAAY
ARVDMVTHRGEFAVRGGIIDVFPATESHPIRVEFFGDEVDSMRWFAVADQRSLTSLSGTI
THPERLYAPPCRELLITPEVQSRAAKLKDQFPAAASMLEKIAGGIAVEGMESLTPILVDA
MVPVVSELPPGSIAVVLEPERVRGRAHDLEATNEEFLEAAWSSASEGGAAPLDVGALNQQ
LSSASFASLAETRTAALRSGLSWWSVSALGTDQELNPELDVLSIPAREPRGYQGNVAEML
EFIGSRVRDQWRVVVATDGPGPAQRLAELFHDADIPASRVETLDAAPEPGIIEVTTAAVG
HGFVFDELKLGLLTEADLLGRSSASGTKDMRKMPSKRRNAVDPLQLRAGDYVVHEQHGIG
RFVELIQRRVAGTDGNREYLVLEYAPAKRGAPGDKLFVPTDQLDQITAYVGGDTPALSKM
GGSDWASTKNKARRAVKEIAGELIRLYSARMASKGHAFAPDTPWQRELEEAFPYIETPDQ
LTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLAQQH
YETFSERFSGFPVRVKPLSRFQTGKEAKETAEGVANGSVDLVIGTHRLLSKDFHFKDLGL
VIVDEEQRFGVEHKEQLKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHP
VLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQM
SESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQLRGRVGR
GRERAYAYFLYPAEKPLGEVALERLKAVAAHNELGAGMQLALKDLEIRGAGNLLGGEQSG
HIAGVGFDLYIRLVGEAVANFRGESEDKAAEMKIELPVNAHLPHDYVPGDRLRLEAYRKL
ASAQNSEAIDEVLEELVDRYGEPPLAVNNLVAVARFRVAARELGLSDVAVQGNFVKFTPA
DLPESKAMRLKRLYPGSLVKPALSQILIPKPKTARIGGRDLVDGEILGWAEQVLTAIFSD
GPEA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgaatggtttgcgcgcgtcactgcgtgatgattcgagcgttacccgggtgcgt
caacaagctgagcagccgcatgcccagcgcagcgaagatctacaaattggtgccccgaat
ggcttgcgtgcgccactgctagccgagattgccgagggcatggcaaccgcggtagcaccg
accgaccgctccagcgtggtgctggcgattaccgctacttccagagagagcgaagacctg
accgaagcgctccgcgcctacttgcctgccgactcggtgattgacttcccgagctgggag
accttgccgcacgagcgcctttcgccgcgttcggacactgtgggtcgccgtcttgcggtg
ttgcgcaggctcaaacacggtgccgccgggcagggcgaattgcgcgtcgtggtcgcgccg
atccgggccgtagtgcagcccattgtcgccggactgggcgatctagaaccagtggaactc
actgtgggacagctgatcgcttttgacgaggtagttcagcggttggcggctgccgcctac
gcacgggtcgatatggtcacccatcgtggtgaattcgcagttcgcggcggcatcatcgac
gttttcccggccactgagagccacccaatccgggtcgagttcttcggcgacgaggtcgat
tcaatgcgttggttcgcggtcgccgatcagcgctcgctgacttcactgagtggcaccatt
acccatccggagcggctttatgcgccgccttgccgggaactgctgatcactcctgaggtg
caatccagggcagcgaagctcaaagatcagttccccgccgcggcttctatgctggagaaa
atcgccgggggcatcgcggtggaagggatggaatctctcacgccaatcttggtcgatgcc
atggtgccggtggtctccgagctgccgccggggtcgattgccgtggtgctcgaaccggag
cgggtgcgcggccgggcccacgacttggaggccaccaatgaggagttcctggaagctgct
tggtcttcggcctccgaaggcggtgccgccccgctggatgtcggtgcactgaatcagcag
ctttctagtgcaagttttgcttcgctggccgaaacccgcaccgcggctctgcgatctgga
ctgagctggtggtcagtctcagcgctaggcaccgaccaggagttgaaccctgagctggac
gtgctcagcattcccgcgcgggaaccccgcggctatcaaggcaatgtggccgagatgctc
gaattcatcggctccagggttcgcgatcaatggcgcgtggtggtggccaccgacggtccc
ggtccggcgcagcgcctcgccgaactattccacgacgccgatattccggcgagccgggtg
gaaaccctggatgccgcgcccgagccgggcattatcgaggtgaccaccgccgccgtcggg
catggtttcgtgtttgacgaactcaaactgggtctgctcaccgaagctgatctattgggc
cgttcctcggcttccggcacgaaagacatgcggaaaatgccgtccaagcgacgcaatgct
gtcgatccacttcagctgcgggctggcgactacgtggtgcacgaacaacacggtatcggc
cgttttgttgaactgatccagcgccgggtagcgggtaccgatgggaaccgcgagtacctg
gtactggaatacgcaccggcgaagcgtggcgcgcccggtgacaagcttttcgtgccgacc
gaccagttggatcagatcaccgcttacgtcggcggtgacaccccggcgctgagcaaaatg
ggtggctcggactgggcctcgacgaagaacaaggcacgccgggcggtcaaggagattgcc
ggtgagttgatcaggctgtactccgctcggatggcctctaaggggcacgccttcgccccg
gatacaccctggcagcgggagcttgaggaagccttcccttacattgaaacgccggatcag
ctgaccaccatcaatgaggtcaaagccgatatggaacgggagatcccgatggatcggctg
gtttccggcgacgtcggctacggcaagacagaaatcgcggtccgggccgcgttcaaagcc
atccaggacggcaagcaggtcgccgtgctggtgccgaccaccctgctcgcacagcagcac
tacgaaaccttttcggaacggttctccggcttcccagtgcgggtcaaaccgctttcccgc
ttccaaactggcaaggaggcgaaagagaccgcagaaggggtggctaatggctcggtagac
ctggtgatcggcacccaccggctgctctccaaagatttccatttcaaggatctgggcttg
gtgattgtcgatgaggaacagcgctttggtgtggagcacaaggaacagctcaagaagatg
cgcaccaatgtcgatgtgctggcgatgagtgcgacgccgatcccgcggaccttggaaatg
tcgttgaccggtatccgcgagacctccacgctggccaccccaccggaggaacggcacccg
gtgctcacctacgtcgggccgtacaccgataagcaaacgtcggcggcgatcaggcgcgag
ctgatgcgcgaaggtcaggtcttctttgtgcataaccgggtgtcctcgattgagcgaatt
gctgcgcacgtgcagcaactggtgccggaagcgcggatcgcggtggcacatggtcagatg
agcgaatctcgacttgaacagatcattgtggacttctgggagaagcgtttcgacgtctta
gtctgcaccaccattattgagaccggcttggacatttccaatgcaaatacgctgattgtg
gacggcgcggataagtacggcctctctcaactgcatcagcttcgtggccgggtgggacgt
ggccgggaacgcgcctacgcctacttcctctacccggcggaaaagccgcttggcgaggtg
gccttggaacgactcaaggcggtggcggcgcataatgaactcggtgctggtatgcagcta
gctctgaaagatctggaaatccgcggtgcgggcaatctgctcggcggcgagcagtccggc
cacatcgccggggtcggcttcgacttgtatattcggctggtcggcgaggcagtagctaac
ttccgaggtgagtccgaagacaaggcagcggagatgaaaatcgagctgccggtcaatgca
catctgccgcacgactatgtgccgggggatcgactcaggttggaggcttaccgaaagctc
gcctccgcgcagaattcagaagcaattgacgaggtgctcgaagagctcgttgaccgctat
ggtgagccgccgctcgcggtgaacaacctggtcgcggtggcccgcttccgggtcgctgct
cgggagctgggcctgagcgatgtggcggtgcagggtaacttcgtgaagttcacaccggcg
gatctaccggagtccaaggcgatgcggctcaagcggctttaccccggttcgctggtgaaa
cctgcgctctcgcaaatcctcattcccaaacccaagacggcgcggatcggtggtcgtgat
ctggtggatggtgagattctcggctgggccgagcaggtactgacagcgatctttagcgac
ggacccgaggcctga
DBGET
integrated database retrieval system
