Psychromicrobium lacuslunae: UM93_03105
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Entry
UM93_03105 CDS
T03775
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ari
Psychromicrobium lacuslunae
Pathway
ari02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ari00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UM93_03105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ari03021
]
UM93_03105
Transcription machinery [BR:
ari03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UM93_03105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AJT40761
UniProt:
A0A0D4BXC2
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Position
682394..683770
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AA seq
458 aa
AA seq
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MSPTARKASTATVSATPEEPAKKQTTTRTSNAPKALVTPAGRKPAGKVVPVEEAPEKLTP
AKKRAATAAAKKTTADTETPKATRGRKPKADSESEEAEVKVEDLEVSEETEEPEEVTEEG
LAEVAEVAEEATGSGFVYSDADDDDAPVQQVMSAGATADPVKDYLKQIGKVALLNAEQEV
DLALRIEAGLYAEEKLAADDGKIAEKLKREYQWVIHDGKRAKNHLLEANLRLVVSLAKRY
TGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV
HMVEVINKLARVQRQMLQDLGREPTPEELALELDMTPEKVVEVQKYGREPISLHTPLGED
GDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVAMRFGLTDGQPKTLD
EIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtgtctccaaccgcacgtaaggccagcacagccaccgtgagcgctacccccgaagaacct
gccaagaagcagacgacaactcgaaccagcaatgcgccgaaggctcttgtcactccggcc
ggacggaagcccgcgggcaaggtagttcccgtcgaggaagccccggagaaactcactccg
gcgaagaaacgtgccgcaaccgcagcggctaagaaaaccactgccgacaccgaaacccct
aaggccacccgaggccgtaagccaaaggctgattcggagagcgaagaggccgaggtcaag
gtagaggatctcgaagtcagtgaagagactgaggaaccggaagaagtaaccgaagagggc
ctcgcagaagtcgctgaagttgctgaagaagcgacgggctcgggttttgtttattcagac
gccgacgatgacgatgcgccggtccagcaggtaatgtcggcgggtgccaccgctgacccg
gtcaaggactacctgaagcagatcggtaaagtggcgttgctcaatgcggagcaagaagtc
gacctggcgctacgcatcgaggcgggcctgtacgctgaagaaaagctggccgccgatgac
ggcaaaattgccgagaagctcaagcgcgaataccagtgggttatccatgatggaaagcgc
gccaagaaccatctgctggaggccaatctccgactcgtggtttcgctggccaagcgttac
acgggccgcggcatgcttttcttggaccttatccaggaaggtaacctgggcctgatccgt
gccgtcgagaagtttgactacaccaagggcttcaagttctcgacctacgccacctggtgg
atccgtcaggccatcactcgggcgatggctgatcaagctcggaccattcgtattccggtg
cacatggtcgaagtgatcaataagctcgccagggtgcagcgccagatgctgcaggacctg
ggccgtgaaccaacgccggaagagctggccctggagctcgatatgacccctgagaaggtg
gtcgaggtgcagaagtacggtcgagagccgatttccttgcacacgccgctgggtgaggat
ggcgactctgaattcggcgatctgatcgaggactcggaagccgtggttcctgccgacgcg
gtgagcttcaccctgctccaggagcaactccactcggtactcgacacgctttccgagcgt
gaagctggcgtggtcgcaatgcgtttcgggctcaccgacgggcagccgaagactttagac
gaaatcggcaaggtttacggcgtcactcgcgaacgaatccgacagatcgaatcgaagacc
atgtcgaagctacggcatccttcgcgttcgcaggtactgcgcgactacctcgactaa
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