Psychromicrobium lacuslunae: UM93_07205
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Entry
UM93_07205 CDS
T03775
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ari
Psychromicrobium lacuslunae
Pathway
ari03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UM93_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ari03021
]
UM93_07205
03019 Messenger RNA biogenesis [BR:
ari03019
]
UM93_07205
Transcription machinery [BR:
ari03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UM93_07205
Messenger RNA biogenesis [BR:
ari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UM93_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
AJT41353
UniProt:
A0A0D4BYE3
LinkDB
All DBs
Position
complement(1545165..1547237)
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AA seq
690 aa
AA seq
DB search
MTETTSLPAGVDNANSETAAGNAAAPAKSNGLAGLKLAQLQALAGQLGITGGSRMRKSDL
VTAISAHQRGSSVADRDTKSNSNGRGSKARQSREQEQEKAPATEAAPAVEAASSESAESA
PASTGRGRGRSRRAASDGVVSTAASTENVEAAVEQPSNDSANENSENEGGQRRQRGRNRR
DNNRNNTSAESTEGAAEQGEKDASQQNSAEGAQNQNRNENRQGRDNQQNRGEKNDGEDRG
NRNERRRQRNGRNDRDNGGNSGEDRGNNRNDRGNSRNDRYRDRNDRRRGRNQGPDVDDVE
VTEDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLAQVKKHNMRKGDAVVGAIRAP
REGEDRNQNQRQKFNALVRVTSVNGKNPEELKDRVEFTKLVPLYPTERLRLETDPKKIGP
RVIDLIAPIGKGQRGLIVSPPKAGKTLILQSIAEAITTNNPEVHLMMVLVDERPEEVTDM
QRTVRGEVIASTFDRPADDHTQVAELSIERAKRLVEMGMDVVVLLDSMTRLGRAYNNSAP
SSGRILSGGVDAAALYPPKRFFGAARNIENGGSLTIIASALVETGSKADEVIFEEFKGTG
NSELRLSRSLADKRIFPAVDVNASSTRREENLLSQEEVKIMWRLRRVLSGLEQQQALELL
TSKLRETQSNVEFLMQIQKSTLSAKSDDDK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaaaccaccagcctgcccgcaggcgtggacaatgccaattctgaaactgccgct
ggcaatgctgcggccccggccaagagcaatgggctcgccggactgaaattggcgcaatta
caggctcttgcaggccagctcggaattaccggcggctcgcggatgcgcaagagcgacttg
gtgacggccatctcggcccaccagcgtggctcatcggtcgccgatcgcgacaccaagagc
aatagcaacggccgcggcagcaaggcgcgccaaagtcgagagcaagaacaagaaaaggca
ccagccaccgaagcagctcccgccgtcgaggctgcttccagcgagtccgctgaatccgca
ccggcaagcaccggccgtggccgtggccgtagccgtcgtgctgcgagcgacggagtggtc
agcactgccgccagcactgagaatgtggaagctgcggtggagcagcctagcaatgactcg
gccaacgagaatagcgagaacgaaggtggccagcgccgccagcgtggtcgcaatcgtcgg
gacaataaccgtaataacacctctgctgagtccaccgagggcgcagctgagcaaggcgaa
aaagacgcttcacagcagaattctgccgagggcgctcagaatcagaaccgcaatgagaac
cgtcagggtcgcgataaccagcagaaccgtggcgagaagaacgacggcgaagaccggggc
aaccgcaacgagcgccgtcgccagcgcaatggtcgtaatgaccgcgataacggcggcaac
tccggcgaggatcgtggcaataaccgcaatgatcgtggcaatagccggaatgatcgttac
cgtgaccgcaatgatcgccgccgcggccgcaatcagggcccggacgtcgacgacgtcgag
gtcaccgaggatgacgtcctgctgccggtagcgggcatcctggacgtgctggaaaactac
gccttcgtgcgtacctccggctacctgcccggaccgaacgatgtttatgtttcgctggct
caggtcaagaagcacaatatgcgcaagggcgacgccgtggtcggtgcgatccgtgcgcca
cgcgagggcgaggaccggaaccagaatcagcggcagaagttcaacgctctggtgcgggta
actagcgtcaatggcaagaacccggaagaactcaaggaccgggtcgagttcaccaagttg
gtgcccttgtacccgaccgagcgcttgcgcttggagaccgatccgaagaagatcggccct
cgagttattgacttgatcgccccgatcggcaagggccagcgtggtctgatcgtttccccg
ccgaaggccggtaagacactgatcttgcagtccatcgccgaggcgatcactaccaataac
cccgaagttcatttgatgatggtgctggttgacgagcggccagaagaagtcaccgatatg
cagcgcaccgtgcgcggcgaagtgattgcttcgaccttcgatcgcccggccgatgatcac
actcaggtcgccgagctgtcgattgagcgcgctaagcgactggtcgaaatgggcatggac
gtcgtcgtgctgcttgactcgatgacccgtttgggccgggcctacaataactcggcacct
tcttccggacgtatcctctccggtggtgtggacgccgctgcgctctacccgccgaagcgt
ttcttcggtgctgctcgcaatatcgagaacggcggttcgctgaccatcattgccagtgcc
ctggtggagaccggttccaaggccgacgaggtcatcttcgaagagttcaagggtaccggc
aactccgagttgcggctttcccgttcgctggccgataagcgcatcttcccggcggtggat
gttaatgcatccagcacccgtcgcgaagagaacctgctctcccaagaagaggtcaagatc
atgtggcgtctgcgccgagtgctctccggcctcgagcagcagcaggcgctagagttgctg
acctccaagctgcgtgagacgcagagcaatgtggagttcctgatgcagattcagaagtcg
acgctgagcgctaagtccgacgacgataagtag
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