Psychromicrobium lacuslunae: UM93_10445
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Entry
UM93_10445 CDS
T03775
Name
(GenBank) transferase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ari
Psychromicrobium lacuslunae
Brite
KEGG Orthology (KO) [BR:
ari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ari03016
]
UM93_10445
Enzymes [BR:
ari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UM93_10445
Transfer RNA biogenesis [BR:
ari03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UM93_10445
Prokaryotic type
tRNA splicing ligases
UM93_10445
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJT41830
UniProt:
A0A0D4C091
LinkDB
All DBs
Position
complement(2224839..2226005)
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AA seq
388 aa
AA seq
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MKEINSKLYSWASIIDELTMQQAQVTSTMPFIFPHLALMPDAHLGKGATVGSVIPTLGAV
IPAAVGVDIGCGMIAVKTQFTASQLPEDRKTLREQIERAIPLSAGRYNRKVVATAEPRIA
QLRELAERAEFDPANYAGNWELQLGTLGSGNHFIEVSLDEDEGVWLFLHSGSRGVGNKIA
QQHIKVAQRLAKQYWIQLPDPDLAYLVEGTKEFSAYIRELNWAQQFALLNREEMMDRVIR
QFAEWLGEPVQEQQRINCHHNFTQRETHFGKSVWLSRKGAIKAEPGDLGLIPGSMGTASY
VVEGLGDKMSLNSSPHGAGREFSRSKARKTFNLEQLREAMVGIEFRDTEAFVDEIPQAYK
PIDTVMQDAAPLVKIRHTLRQIINVKGD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaatcaatagcaagctttacagttgggcctcgatcattgatgaactgaccatg
cagcaggctcaggtcacctcgaccatgccgttcatcttcccgcacctggccctgatgcct
gacgcgcatctgggaaagggggccactgttggttcggtcatcccgacgctcggggcggtc
attccggcggcggtcggcgtcgacatcggctgtggcatgatcgcggtgaagacgcagttc
acggctagtcagctgcccgaggatcggaagacgctgcgcgagcagattgaacgggcaatt
ccgctctctgccggtaggtacaaccgcaaggtcgttgccaccgcggagccgaggatcgct
cagctgcgtgaactggcagagcgcgcggaattcgatccggcaaactacgccggtaactgg
gagctgcagctgggtacgctgggcagcggcaaccacttcatcgaggtctcgcttgacgaa
gacgagggtgtttggctcttcctgcactccggttcgcgtggcgtaggtaataagatcgcg
cagcagcacattaaggtggcgcagcgactggccaagcagtactggattcagctgcccgat
cccgatctggcctacctggtggagggcaccaaggagttcagcgcctacattagggagctg
aactgggctcagcagtttgcgctgctgaaccgtgaggaaatgatggaccgggtgatccgt
cagttcgctgagtggctgggggagccggttcaggagcagcagcggattaactgtcaccac
aacttcactcagcgtgagactcacttcggtaagtcggtgtggctgtcccggaagggtgcg
attaaggccgagcccggcgatctggggctgatccccggctcgatgggtactgcttcgtat
gtggtggaggggttgggcgacaagatgtcgctgaactcttcgccgcacggcgcgggccga
gagttctctcggtccaaggccaggaagaccttcaacctggagcagctgcgtgaggcgatg
gtcggcattgagttcagggataccgaggcgtttgtggacgaaatcccccaggcctacaag
ccgatcgataccgtgatgcaggacgctgcgccgctggtcaagatcaggcacacgctgcgt
cagatcattaatgtgaagggcgactga
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