Aeromonas rivuli: KYK33_17170
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Entry
KYK33_17170 CDS
T07884
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ariv
Aeromonas rivuli
Pathway
ariv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ariv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYK33_17170 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ariv03019
]
KYK33_17170 (rnr)
03016 Transfer RNA biogenesis [BR:
ariv03016
]
KYK33_17170 (rnr)
Enzymes [BR:
ariv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KYK33_17170 (rnr)
Messenger RNA biogenesis [BR:
ariv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KYK33_17170 (rnr)
Transfer RNA biogenesis [BR:
ariv03016
]
Prokaryotic type
tRNA degradation factors
KYK33_17170 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
CSD
Perilipin_2
Motif
Other DBs
NCBI-ProteinID:
UBO73521
LinkDB
All DBs
Position
complement(3729860..3732238)
Genome browser
AA seq
792 aa
AA seq
DB search
MSEKDPFLQREAEKYENPIASREMLLELIRGHEKPMSREELATVLKLTEEEPLEALRRRL
RAMERDGQLVFTRNQCYALPDRLNLVKGYVLGHKDGFGFLRPEGGGSDLFLNNREMQKLM
HGDYVLVQPTEIDRKGRQEARVVRLLKAREADIVGRYFVENGMGFVVPDDSRIGQDIVIP
EGENKGARQSQVVVVRVTQRATARINAVGTVLEVLGENMAPGMEIDIALRTHGIPHTWPD
EVTKEIAGLGEQVPEEAKVGRIDLRSLPLVTIDGEDARDFDDAVFCQAKKSGGWRLWVAI
ADVSSYVRPGTALDGEAYQRGNSVYFPEYVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SSGGRMSGYKFYEAVMNSHARLTYNKVAAMLDGDAKLRHQYDPLVGHIEELNNLYKALKH
ARHQRGAVEFESEETRFIFNAQRKIDRIVPLVRNDAHKIIEECMIMANVAAARYIEKNEA
AALFRVHDRPGEERLTNFRGFLAELGLELKGGLEPEPKDFAELAAKFEGRPDAELLSTML
LRSMRQAVYQADNIGHFGLALKSYAHFTSPIRRYPDLILHRAIKFQAAKEQAAQRNKWTP
SGGYHYQLAEVDPMGEHCSMTERRADDATRDVADWLKCEYMLDHVGDEFDGVIASVTGFG
FFVRLAEIHIDGLVHISSLDNDYYQFDPMHQQLIGENFRRRYRLGDRVRVKVMAVNLDDR
KIDFTMVEEPLKATGKNAKEMARKQAEIKSEKAKSNRRHERRQEGKPLKTTAAKPNNRRP
SKKARDKAKSTK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaagatcctttcctccaacgagaggccgagaaatacgagaatcccatcgcc
agccgcgaaatgctgctggagcttattcgcggtcatgaaaaacccatgtcccgcgaagag
ctggccacagtcctcaagctgactgaagaagagccgttggaagcccttcgccgtcgtctg
cgcgccatggagcgtgacggacaactggtcttcacccgcaaccaatgttatgccctgccg
gatcgtctgaatctggtgaaaggctatgtgctcggccataaagatggattcggttttctg
cgccctgaaggtggtggatcggatctgttcctgaacaaccgcgagatgcaaaagctgatg
cacggcgattacgtgctggtgcaaccgaccgagatcgatcgcaagggccgccaggaggcg
cgcgtcgtgcgtctgctcaaggcgcgtgaggctgacatcgtcgggcgttacttcgtcgag
aacggcatgggcttcgttgtgccggacgacagccgcatcggccaggacatcgttatccct
gaaggggaaaacaagggcgctcgccagagccaagtggttgtagtgcgtgtcactcagcgt
gccacggcgcgcatcaatgcggtcggtaccgtgctggaagtgttgggcgagaacatggcc
cccggcatggaaatcgacatagccctgcgcacccatggcattcctcacacttggcccgac
gaagtgaccaaggagattgcagggctgggcgagcaggtgccggaagaggccaaagtgggc
cgcatcgacctgcgttccctgccgttggtgaccatagatggcgaagatgcccgcgacttc
gatgacgctgttttctgccaggccaagaagagtggtggctggcgcctctgggttgccatt
gccgacgtctcctcctatgttcgcccaggtaccgccctggatggcgaggcttatcagcgt
ggcaactccgtctacttccccgagtacgtggtgcccatgttgcctgaggtgctctccaac
ggcctctgctccctgaacccgcaggtagacaggctctgcatggtgtgcgagatgaccatc
tcctccggcggccgcatgtccggctacaagttctacgaagccgtgatgaactcccacgct
cgcctgacctacaacaaggtggcagccatgctggatggcgatgccaagttgcgccatcag
tatgaccctctggtggggcatatcgaggagctcaacaacctctacaaggcgctcaagcat
gcccgccatcagcgcggtgccgtggagttcgagagcgaagagacccgcttcatcttcaac
gcccagcgcaagatagatcgcatcgtgccgctggtgcgcaacgatgcgcacaagatcatc
gaagagtgcatgatcatggcgaacgtggctgcggctcgctatatcgagaagaacgaggct
gccgccctgttccgggtgcatgaccgtccgggtgaagagcgtctgaccaacttccgtggc
ttccttgccgaactgggcctggagctcaaaggtggtctggaacccgagccgaaagatttc
gccgagctggctgccaaattcgaaggccgtccggatgctgagctgctctccaccatgttg
ctgcgctccatgcgccaggcggtctatcaggccgacaacataggtcacttcggtctggca
ttgaagtcctatgctcacttcacctcgccgatccgccgttatcctgatttgatcctgcac
cgcgccatcaagttccaggcggccaaggagcaggcggcccagcgtaacaagtggaccccg
agtggcggctaccactatcagctggcagaagtggatcccatgggcgagcactgctccatg
accgagcgccgtgccgatgatgccacccgcgatgtggccgactggctcaagtgcgagtac
atgctggatcacgtgggtgacgagttcgacggcgtcatcgccagcgtcaccggctttggc
ttcttcgtgcgtctggcggagatccacatcgacggtctggtgcacatcagctccctcgac
aatgactactaccagttcgaccccatgcatcagcagctgatcggcgagaacttccgccgt
cgctatcgtctgggtgatcgggtgcgggtcaaggtcatggccgtcaatctggacgatcgc
aagatcgacttcaccatggtggaggagcccctcaaggcgaccggcaagaatgccaaggag
atggcgcgcaaacaggccgagatcaagagcgagaaggccaagagcaatcgccgccatgag
cgtcgtcaggagggcaaacccctgaagaccacggccgccaaacccaacaaccgccgtccg
agcaagaaggcgcgtgacaaggccaagagtacgaaatga
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