Acinetobacter radioresistens: DOM24_01030
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Entry
DOM24_01030 CDS
T05620
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arj
Acinetobacter radioresistens
Pathway
arj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DOM24_01030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arj03021
]
DOM24_01030 (rpoC)
03400 DNA repair and recombination proteins [BR:
arj03400
]
DOM24_01030 (rpoC)
Enzymes [BR:
arj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DOM24_01030 (rpoC)
Transcription machinery [BR:
arj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DOM24_01030 (rpoC)
DNA repair and recombination proteins [BR:
arj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DOM24_01030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AWV85232
LinkDB
All DBs
Position
220490..224680
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLTDEEYYNALEEHGDE
FTAKMGAEAVQDLLKDIDLEAEISRLREEIPQTTSETKLKKASKRLKLMEAFKESNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPSLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLAHV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVAMHARVKARVHQTIINENGEREQQTIIVQTTPGRCLLWEVVPEGLSFEQINVE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMVIPPQKQAIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSFVSVTNREGQEEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTVGGLTMTPLIQGGDVIEPL
RDRVLGRVIAEDVIRPGSEEVLFPRNTLIDEKIATQLEEAGIDEIRVRSVISCDSAFGVC
AKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEVGIADELGRERERYKLPYGASILLKEGEAVEAGG
IVATWDPHTHPLVTEVAGKARFSQITDGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTADGGEQFYFLPQNTIVTVRSGETIGVGDVIGRVPQESSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGVVSFGKETKGKNRLVITPDDGAEVYEELIPKWRQINVFEGEHV
NRGEVISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
EITDGGDSSFIKGEQVDYIRVVQENQAVLSQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEFALAND
FSEVDQAFSQALNEEL
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgtaagaaaacggattcagacggtcatgcaccggtt
gaatttgaccgtatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcac
ggcgaagtgaaaaagcctgagacaattaattatcgtacttttaaaccggagcgcgacggt
ttattctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaagtacaaaggcgtcatctgtgaaaaatgtggcgttgaagtaacaactgcg
aaagttcgtcgtgaacgtatgggtcacatcgagcttgcctctccagtggcacacatttgg
ttcctgaaatcattgccgagccgtattggtctgcttcttgacatgaccttgcgtgatatt
gaacgtgtactgtatttcgaatcttatgtagtgactgatccgggtatgactccgtttgag
aaataccagttgcttactgatgaagaatactacaacgcacttgaagaacacggtgatgaa
ttcaccgcaaaaatgggtgcggaagctgttcaagacctgttaaaagatatcgatcttgaa
gcagaaatctctcgtttgcgtgaagaaattccacaaactacgtctgagaccaagctcaag
aaagcatcaaaacgtcttaaactgatggaagcttttaaagagtcgaacaataagccggaa
tggatggtgatgaatgtactgccagtacttccaccagatcttcgtccgttagttccactt
gagggcggccgttttgcgacttctgatctgaatgatctttaccgtcgtgtgatcaaccgt
aacaaccgcttaaaacgtcttcttgacctggctgctccagatattatcgtacgtaatgaa
aaacgtatgcttcaagaatctgtagatgcattgctggataatggacgtcgtggtcgtgcc
attactggttctaacaaacgtcctttaaaatctttggcagacatgatcaaaggtaagcaa
ggtcgtttccgtcagaacttgctgggtaaacgtgttgactattctggccgttcagtaatt
acggtggggccgtctctacgtctgcatcaatgtggtctgcctaagaaaatggcacttgaa
ctgttcaagccatttatttttgcaaaactgcaggcttcaggccaagcaaccaccattaaa
gctgccaagaaaatggttgagcgcgaaactccagaagtttgggacgttcttgctcacgtt
atccgtcagcacccggttatgctaaaccgtgcgccaacacttcaccgtctgggtcttcaa
gcatttgaaccgatcctgattgaaggtaaggcaatccgtctgcatccattggtatgtacc
gcatttaacgccgactttgacggtgaccaaatggctgtacacgtaccattgacgcttgaa
gcccagcttgaagcgcgtgcactgatgatgtcgactaacaacatcctgtctcctgcgaac
ggtgaacctatcattgtgccgtctcaggacgtggtcttaggtctttactacatcacccgt
gatgcagtgaatgccaaaggtgaaggcatggtgtttgctgatacgcatgaggtaaaccgt
gcactggctaccggtcaggtagcgatgcatgcccgcgtaaaagcacgtgtacaccagacc
attatcaatgaaaatggtgagcgcgagcagcagacaatcattgtacagaccacgccaggc
cgctgcctgttatgggaagttgtgccggaaggtttaagcttcgagcagatcaatgtagag
atgaccaagaaaaatatctcgaaactgattaactcttgctaccgtaagctgggtctgaaa
gatactgttatttttgctgaccagttaatgtacttgggcttccgtcaagcgactcgctct
ggtgtatctgttggtatggaagacatggttattccgccgcagaaacaggcaattattgac
aaggcggaaactgaggttcgtgaaattgaacagcagtttgaacagggctttgttaccgca
ggtgagcgttataacaaagtagtagatatctgggcacgtactaatgaccaggttgcaaaa
gcgatgatggataacctgtcatttgtaagtgtaaccaaccgtgaaggccaggaagaaaag
cagaaatcatttaactcgatttatatgatgtctgactctggtgcgcgtggtagtgcagca
cagattcgtcagctcgcaggtatgcgtggtctgatggcgaaaccggatggttcgatcatt
gaaacaccgattaaagcaaacttccgtgaaggtttgactgtacttcagtacttcatctcg
actcacggtgcacgtaaaggtctagccgataccgcattgaaaactgcgaactcgggttac
ctgacgcgtcgtctggttgacgtagcgcaagatttagtcattactgagccggactgtggc
actgtgggtggcttgacgatgactccactcattcagggtggtgacgtgatcgagccgtta
cgtgatcgtgtactgggccgtgtgattgctgaagatgttatccgtccaggcagtgaagag
gttctcttcccgcgtaatacgttaattgacgaaaaaattgctactcagcttgaagaagca
ggtatcgatgaaatccgtgtacgttcagtgatcagctgtgactctgcatttggtgtttgt
gcaaaatgttatggtcgtgaccttgcacgtggacatctggtgaatccaggtgaatctgtt
ggtgttatggcagcgcagtcgattggtgaaccaggtacacagttaaccatgcgtaccttc
cacgtgggtggtgctgcaagccgaacttctgctgcaaacagtgttcaggtacgtaacaaa
ggtactgtacgtttccataatgtgaagactgtacagcatgctaaaggccacttggtttca
gtttcccgttcgggtgaagttggtatcgctgatgagctgggtcgtgagcgtgaacgttac
aaactgccgtatggtgcaagcattctgctgaaagaaggtgaagctgtagaagctggtggt
attgtggcaacttgggatccgcatacccatccgctggtaacagaagtggctggtaaggcg
cgtttctcgcaaattactgatggtgtgactgcaacatcgaaaacagatgatgcaacaggt
atgactactgttgagattctgccagtgactgctcgtcctgcatcaggtaaagatttgcgt
ccagcgattgtacttgatacagcagatggcggtgaacagttctacttcctgccacagaac
acgattgtgactgtacgcagcggtgaaacaattggtgtaggtgatgttattggtcgtgta
ccacaggaatcttcacgtactcgtgatattaccggtggtctgccacgtgttgccgacctg
tttgaagcacgtaagccaaaagagcatgcgatcttggcagaagtatcaggcgtagtaagc
ttcggtaaagaaaccaaaggtaaaaaccgtctggtaattactccggatgatggcgctgaa
gtttatgaagagctgattcctaaatggcgtcagatcaacgtgttcgaaggcgagcatgtg
aatcgtggtgaagtcatttctgatggtccacaaaatccacatgatatcttgcgtttgaaa
ggcgaagtggcattgaccaactacatcgtgaacgaagttcaggacgtttaccgtcttcag
ggtgtaaaaatcaatgacaagcatattgaagtcatcgtacgtcaaatgctgcgtaaggtt
gaaatcactgatggtggtgattcaagcttcattaaaggtgaacaagtggattatatccgc
gtggttcaagagaaccaggcagtcctgtctcagaacaagttccctgcgaagtttgaacgt
caattgatgggtattaccaaagcatcattgtcgactgactccttcatttctgctgcatcg
ttccaggaaaccactcgtgtgttaactgaagcagctgtaacaggtaaggaagatgatctg
cgcggcctgaaagaaaacgtggtagtaggccgtctaattccggcaggaacaggcttggct
tatcacttggagcgtcgtcgtcaggaagcagaagctgcagaattcgctttggctaatgac
ttctctgaagtagatcaggcattttctcaagcactgaatgaagagctttaa
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