Acinetobacter radioresistens: DOM24_05790
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Entry
DOM24_05790 CDS
T05620
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arj
Acinetobacter radioresistens
Pathway
arj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DOM24_05790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arj03400
]
DOM24_05790
Enzymes [BR:
arj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DOM24_05790
DNA repair and recombination proteins [BR:
arj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DOM24_05790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWV86109
UniProt:
A0A2T1IXL1
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All DBs
Position
1247755..1251216
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AA seq
1153 aa
AA seq
DB search
MFQKEISQLNLKQLKAGEKRWVGSLLGSSAALLLKEIAEQSRQLLVLVAKNNQHVAQLES
ELEFYGIKPIIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGILLLSASTLAQRVAPT
SWILGEHFDIRVGQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIYASGQEAPI
RIDLFDDEIDSLKFFDPETQRTTSNLTQFKVLPAKEFPLKDGRSTFRDRYAESFPTANPK
KNPIYQDVMEGIASPGIDFYLPLFFSKQSIQTQGMLSAYLPQHSIVITDRDLDECLITFW
KDVNRRYEDRRHNADQPILPPEDLFLKPNALLELLNHFPRIIASSEQFEEKAGVINMAVS
EPPRLPVNPKHEKPFHQVKEYIDNAQHPVLLVTESAGRRESLRDALRSTLGDIPTVANFN
IFQNDQYKIAITTAPLERGLIINDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLVTLSIDDQEYEFLQLDYAEGAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGSDAWNKAKRKALEQIHDVAAELLHIQARRHAKPGFAFEIDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQ
ENVQFKDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVDSIERTAENIRALVPE
ARVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHMPALIPDE
YLGDVHQRLLFYKRISNADTQDKLDNIRMELVDRFGLAPQPVKQLFSVHQIRLKAEQLGI
TKVDIGSHGGSIEFSPDTAVQAISIIQLMQKQPTHFRMEGGQRLKVLVMLEEYEQRIEFI
LKLLDQLTADLNR
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgttccagaaagaaatctctcaacttaatttaaaacaattgaaagcaggtgaaaagcgc
tgggtaggctctttacttggttcttcagccgcactattgcttaaagaaattgctgaacaa
tcacggcaattattagtcttggtggctaaaaataaccagcatgtagcccagctcgagagt
gagctggagttctacggtataaaaccgattattttcccggattgggaaatcctgccttat
gaccggttatctccccatcaggatattgtctcggagcgcctggctatactttctaatatg
cctcagcagggtatattactactttcagcctctacattggcacagcgggttgctccaact
tcctggatattaggcgagcatttcgatatacgtgtcggtcaaaaatttgatcttgaacag
cagaaactacgtctggtacaggctggttatcttttagtagatacagtttatgatcatgga
gagttcgcggtacgcggtagtattatggatatctatgcttcgggtcaggaggcacccatc
cgtatagatctgtttgatgatgaaattgatagccttaaattttttgatccggaaactcag
agaacaacaagtaatttaactcaattcaaggttctaccagcaaaagagtttccgttaaag
gacggacgttctaccttccgtgaccgttatgctgagagctttccgactgccaatccaaaa
aagaatcctatttatcaggatgtcatggaaggtattgcatcaccgggtattgatttctat
ctgccattattctttagtaaacagtcaattcaaactcaaggtatgctatcggcatactta
cctcagcattccattgtcattacagatagggatttagatgaatgtttgatcaccttctgg
aaggatgttaatcgtcgttatgaagatcgacgtcataatgcagaccagcctattctgcca
ccagaagatttattcttaaaaccgaatgctttacttgagttactcaatcattttccccga
attattgcatcatctgaacaatttgaagaaaaggcgggtgtgataaatatggcggtttca
gagccgccccggcttccggttaatcctaaacatgaaaaaccatttcatcaggttaaagaa
tatatcgataacgctcagcatccagttttactggtaactgaaagtgcaggacgtcgcgaa
agtttacgtgatgccttacgctcgactctgggtgatattcctactgttgcaaatttcaat
atttttcagaatgatcagtataaaattgcaattactactgctccacttgagcgtggatta
atcattaatgatcagctgaccgttatttctgaaaatcagttgtatgagcaccgggtagtt
cagcgacgtcgtaagcgtcaacaggaagtttctgaagaatttttaattcgtagtctgact
gaactgagcattggtgcacctgttgtacatattgaccatggtgtaggacgttatgcaggg
ctggttaccttaagtattgatgatcaggagtatgagtttctgcagctggattatgcagaa
ggtgcgaaagtatacgtgcccgttactaacttgcatcttattagccgttatagtggcggt
gacccggatttggctccgctacataagattggtagtgatgcctggaacaaggctaaacgg
aaagcacttgagcaaattcatgatgtggctgcagaactcctgcatattcaggcccgccgt
catgccaagcccggatttgcttttgaaatagatcagagtctgtatatgcagtttgccagt
ggttttgcttatgaagaaaccctggatcaggcaaatgctattgaagcgacattatatgat
atgcaaaaagctgagcctatggaccggctggtctgtggtgatgtaggctttggtaaaacc
gaagtggcaatgcgtgccgcttttgtagcagtacagaataataaacaggtcgcggtactg
gtaccgacaactctgttagcccagcaacactatgaatcattcaaagaccgttttgcagac
tggccggttcgtattgaagtgctatctcgttttggttcaaacaaggcccatgtaaaaaat
attcaggatcttgcagacggtaaagtcgatattgtaattgggactcataaacttttacag
gaaaatgtacagtttaaagatctgggactaatgattgtcgatgaagaacaccgtttcggg
gtgcgtgataaagagcgtattaaagcaatgcgtgcagatgtcgatatgcttactctgaca
gcaacgccgattccacgtacattaaatatggcattttcaggcatgcgtgacctgtcgatt
attgccactccaccagcacgccgtctggctgtaaagacatttgtacaggagcatactgat
gcttctatcaaagaggctattttgcgggaattacttcgcggtggtcaggtatatttcctt
cataatgaagtcgacagtattgaacgtactgcagagaatatccgtgcacttgttcctgaa
gcacgagttgccgttgcacatggacaaatgcgtgaacgtgaactcgagcaggtaatgcaa
cagttttatcacaaacagtataatgtgctggtttgctcgaccattattgaaactggtatt
gatgtccctaatgcaaatactattattattgaacgggcagataaattaggtttggcacaa
ttacatcaattacgtgggcgtgttgggcgctcccatcatcaggcttatgcctacttgctg
gtaccttcgattaaagctttaaaaggtgatgcagagaaacgtttagatgccattcaacgt
gcttctaatctgggcgccggttttatgcttgctacagaagatcttgaaatccgtggggcg
ggtgaactgttaggtgagcagcaaagtggttctatgcaggctattggctatagtctatat
atggaaatgcttgaaaaagcgaccaaagcaattcagcagggcaagaccccaaattttgat
gctccgctttccttaactgcagagattaacctgcacatgccagcactcattccagatgaa
tatttaggggatgtacaccagcggctcttgttttacaagcgtatcagtaatgccgataca
caagataagctcgataatattcgtatggagctagttgaccgtttcggtcttgcaccgcaa
ccagtcaaacagttattcagtgtgcatcagattcgcctgaaagcggaacaacttggaatt
accaaggtggatattgggagtcacgggggaagtatcgaattttcacctgatacagctgtt
caggcgatcagtattatccagcttatgcaaaaacagccgactcactttcgcatggagggt
gggcaacgcttaaaggtgctggtcatgctagaagagtatgaacaaagaattgagtttatt
ttgaaacttcttgaccagttaactgcagacttaaatcgctaa
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