Arthrobacter sp. 'calajunan' LS16: AFL94_02320
Help
Entry
AFL94_02320 CDS
T04078
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
arl
Arthrobacter sp. 'calajunan' LS16
Pathway
arl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFL94_02320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arl03019
]
AFL94_02320
03400 DNA repair and recombination proteins [BR:
arl03400
]
AFL94_02320
Enzymes [BR:
arl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFL94_02320
Messenger RNA biogenesis [BR:
arl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFL94_02320
DNA repair and recombination proteins [BR:
arl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFL94_02320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
HEM4
PhyR_sigma-like
MRFAP1
Motif
Other DBs
NCBI-ProteinID:
ALD62979
LinkDB
All DBs
Position
497088..499208
Genome browser
AA seq
706 aa
AA seq
DB search
MDASLHSDLLSSATAKLRALVRNPDAQFHDGQFEAISALVAQRRRALVVQRTGWGKSAVY
FIASLLLREQGFGPTLIVSPLLALMRDQVAAAERAGVRAAAINSANVLEWREILEKLQRD
EIDVLLVSPERLNNPSFREQQLPMLLDRLGLLVIDEAHCISDWGHDFRPDYRRIRDLINK
LPAGLPVLATTATANSRVVEDVAEQLAGGAGEVFTLRGTLARDSLRLGVLRLPSPRMQLA
WLLSHIEDFTGSGIIYTLTVSAAEDIARMLREAGHQVAAYTGRTDLEERERLEAALKNNE
VKALIATSALGMGFDKPDLGFVIHIGAPSSPVAYYQQVGRAGRGSINADVLLLPGTDDAE
IWEYFATSSMPDQVRATAVLEALGQADGAMSVPALESAVNLRRSPLELLLKVLAVDGAVE
RVAGGWMRTDLPWSYDADRYKRVAASRVHEQRLMIDYENTRGCRMEFLTASLDDPRSAAC
GRCDNCAGAWYNDHIPEESKDNAQNALGRAGVSIEPRKLYPSGLNRLGHTLKGKIPEDEQ
VSIGRALARLTDLGWGNRLRQLFADPADHPIDKAMFEACIKVLSEWNWEQRPVGVVAMPS
STRPQLVTSLAQQLAAVGRLRYLGQLEYRGKPPQNGPGGNSAFRVAAVADAFEIPEPLEA
LLANAPGPVMLVDDLTDSRWSLAMAGRALRIAGAPGVLPFTLGIAG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggatgcctcactgcactcggacctgctgtcctccgccacggccaagctgcgcgccctg
gtgcgcaacccggacgcgcagttccacgacggccagttcgaagcgatcagcgcgctggtg
gctcagcgccgccgcgccctggtggtgcagcgcaccggctggggcaagtccgcggtgtac
ttcatcgcctcgctgctgttgcgcgagcagggcttcgggccgacgctgatcgtctccccg
ctgctggcgctgatgcgcgaccaggtggccgccgccgaacgtgcaggggtgcgggccgcg
gcgatcaactccgcgaacgtgcttgaatggcgcgagatcctggagaagctgcaacgcgac
gagatcgacgtgctgctggtctccccggaacggctgaacaacccgtccttccgcgaacag
cagctgccgatgctgctggaccgactgggtctgctggtgatcgacgaggcgcactgcatc
tccgactggggccacgacttccgccccgactaccgccgcatccgcgatttgatcaacaag
ctgcctgccgggctgccggtgctggcgaccaccgcgacggccaactcccgggtggtggag
gacgtggccgagcagctggccgggggcgcgggggaagtgttcaccctgcgcggcacactg
gcccgcgattcgctgcgcctgggggtgctgcggctgccgtccccgcgcatgcagctggcc
tggctgctgagccatatcgaggatttcaccggttcgggcatcatctacacgctgacggtc
tccgccgcggaggacatcgcccggatgctgcgcgaagccggccaccaggtggccgcctac
accgggcgcaccgatctggaagaacgcgaacgcctggaagcggcattgaaaaacaatgag
gtcaaggccctgatcgccaccagcgcgctgggcatgggcttcgataagccggatctgggt
ttcgtgatccacatcggcgcccccagctctccggtggcctactaccagcaggtcggccgc
gccggccgcggcagcatcaacgccgacgtgctgctgctcccggggaccgacgacgctgag
atctgggagtacttcgccaccagctccatgcccgaccaggtgcgcgccaccgcggtgctg
gaggcgctgggccaggccgacggagcgatgagcgtcccggcgctggagagcgcggtgaac
ttgcgccgttccccgctggaactgctgctgaaggtgctggccgtggatggcgccgtggaa
cgcgtggccggcggctggatgcgcaccgacctgccttggtcctacgacgctgaccgctac
aagcgcgtggccgccagccgcgtgcacgaacagcggctgatgatcgactacgagaacacc
cgcggctgccgcatggagtttttgaccgcgtcgttggacgacccgcgctccgctgcctgc
gggcgctgcgacaactgcgccggcgcctggtacaacgaccacattcccgaagagtccaag
gacaacgcgcaaaatgccctgggacgcgccggggtgagcattgaaccgcgcaagctctat
ccctctggactgaatcggctggggcacacgctcaagggcaagattcccgaggacgagcag
gtctcgatcggccgggcgctggcgcgcctgaccgaccttggctggggcaaccggctgcgc
cagctcttcgctgatcccgccgaccacccgatcgacaaggcaatgttcgaggcctgcatc
aaggtgctctcggaatggaactgggaacagcgcccggtgggcgtggtggcgatgccgtcc
tccacccgcccgcagctggtcacctcgctcgcgcagcagctggccgccgtgggtcggctg
aggtacctgggacagcttgaataccgggggaaaccgccgcagaacgggccgggcggcaac
tcggccttccgtgttgcggcggtggccgatgccttcgagatcccggaaccgctcgaggcg
ctgctggccaatgctccggggccggtcatgctggtcgacgacctgaccgattcgcggtgg
tccttggccatggccggaagggccctgcgcatcgccggggctcccggtgttttgcctttc
actttgggaatcgctgggtaa
DBGET
integrated database retrieval system
