Arthrobacter sp. 'calajunan' LS16: AFL94_05900
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Entry
AFL94_05900 CDS
T04078
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arl
Arthrobacter sp. 'calajunan' LS16
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arl03019
]
AFL94_05900
Enzymes [BR:
arl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFL94_05900
Messenger RNA biogenesis [BR:
arl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AFL94_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_30
ABC_tran
SLFN-g3_helicase
T2SSE
ResIII
FtsK_SpoIIIE
UvrD-helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
ALD63540
LinkDB
All DBs
Position
complement(1300009..1304001)
Genome browser
AA seq
1330 aa
AA seq
DB search
MALTISYPEALPVSGRREDILDAVSKNQVVVIAGETGSGKTTQLPKMLIELGLAEKGMIG
HTQPRRLAARTVAERIAEEMGTSIGEEVGFHVRFTGEVSKRTKLKVMTDGILLAEIQRDK
LLKKYSAIIIDEAHERSLNIDFLLGYLKQIMPRRPDLKIIITSATIDPERFAAHFGTLDA
EGELVPAPILEVSGRTFPVELRYRPLAAEVDLDEDADAESLEDDRDPLDAVTDAVRELAG
EAPGDILIFFSGEREIRDAADALRALVASNKRLPRYEVLPLFARLSLAEQHRVFHPGAAP
RIILATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGR
VSEGIAIRLYSEDDYQSRPEFTDPEILRTNLASVILQMISMGVVASAAEVSEFPFVQPPE
SRAISDGVNLLRELGALDGQKRAGITPVGRQLAQLPLDVRLGRMIVEAAGRGVAKELMVL
AAALSIQDPRERPSEDTGQRERAAELHKRFADDKSDFTALLNLWAYVREQQNELSSSAFR
RLCKAEHINYLRVREWQDLFTQLRQLAKPLGITVAAAPIEPAANEDAVHKSLLSGLLGHI
GLYDERKRDYVGARGTRFAIFPGSGLFKKSPTWVMAAELVETSRLWARTNAVIDPAWVEE
LAPHLLKRTYSEPHWSKRNGSVMGYEKLTLFGLPIVPRRQFHYWRVDKALARELFIRHAL
VEGDWRTHHKFFAKNRALLEEVEELETRMRRHDLRISDEDLFAFYDARLPQDILSERHFD
RWWRKARAADPALLDFDPEALLAADAQALDETAFPKTWALGSIHLPLSYEYNPAAASGEG
DGVSLTVPVVFLNQLDPARFAWLIPGLRHELLTALIRSMPKAIRKNFVPAPDVAGKALAM
LEADFDPATDDLAQSLALVLRRLRGIVVDPAVFDFSTLPAHLRFGFTVTDASGKVLGQGD
DLGKLQYKLAAANRAALASGVNSPGAALPGKPGKPGIPAAAAKGGQDKTATGRQGNKAGK
GTRGAKNAAGAWDQQKLDAWPQLDAAGDTLGDRLPDKVTTTVMGQQITAYPGLIAQGERV
DLTVFRSAVERDAAHRTGVIRLLMLRLPPAAKFVISHLDNTEKLAFTQNPHGSIEHLISD
CTMAAVDKLVPEQLPMDRAAFEALFEVVRAEQIDTVFSITAVVAKVFAAATRISKELKAT
RSLAMYAAITDIRSQLEQLIYPGFIAATGAAHLLRLPRYLAGIEKRLEKLAGGAVTRDSQ
ALVVIQKLEDEYDAALDKVPEGARLPAGLREVKWMLEEMRISLFAQELGTAYSVSEKRIR
KAIKDGLSAL
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaaccatttcctatcccgaagccctgcccgtctccggtcgccgcgaggacatc
ctcgacgcggtatccaagaaccaggtggtcgtgatcgccggcgaaaccggttccggcaag
accacccagctgcccaagatgctcatcgagctcgggctggccgagaagggcatgatcggc
cacacccagccgcggcgccttgcggcgcgcaccgtggccgagcgcatcgccgaggaaatg
ggcacgagcatcggcgaggaagtcggcttccacgtgcgcttcaccggcgaggtttccaag
cgcaccaagctgaaggtgatgaccgacggcatcctgctggcggagatccagcgcgacaag
ctcctgaagaagtactcggcgatcatcatcgacgaggcgcacgagcgcagcctgaacatc
gatttcctactgggctacctcaagcagatcatgcccaggcgcccggacttgaagatcatc
atcacctccgcgaccatcgaccccgaacgcttcgccgcgcacttcggcacgctggacgcg
gagggcgagctggtcccggcgccgatcctcgaggtctccgggcgcaccttccccgtggag
ctgcgctaccgcccgctggccgccgaggtcgacctggacgaggacgcggacgccgagtcg
ctggaggacgaccgcgacccgctggatgcggtgaccgacgcggtccgcgagctggctggc
gaggccccgggcgacatcctcatcttcttctccggcgagcgcgagatacgcgacgccgcc
gatgcgctgcgcgcgctggtcgcctccaacaagcgcctgccgcgctacgaggtgctgccg
ctgttcgccaggctctccctggccgagcagcaccgggtcttccacccgggcgccgccccg
cgcatcatcctggccaccaacgtggcggaaacctccctgaccgtgccgggcatcaagtac
gtgatcgacaccggcaccgcgcgcatctcgcgctactcgcaccgcaccaaggtgcagcgc
ctgccgatcgagcgcgtctcccaggccagcgcgaaccagcgctctggccgctgcggccgc
gtgtccgagggcatcgcgatccgcctctactccgaggacgactaccagagccgaccggag
ttcaccgacccggagatcctgcgcaccaacctggccagcgtgatcctgcagatgatctcc
atgggcgtggtggcctcggccgcggaggtctccgaattcccgtttgtgcagccgccggaa
tcgcgggcgatctccgacggcgtgaacctgctgcgcgagctgggggcgctggatggccag
aagcgcgcgggcatcaccccggtgggccgccagctggcgcagctgccgctggatgtgcgg
ctgggccgcatgatcgtggaggccgccgggcgcggcgtggccaaggagctgatggtgctg
gccgcggcgctgagcatccaggatccgcgcgaacgcccctccgaggacaccggccagcgc
gagcgcgccgccgagctgcacaagcgcttcgccgacgacaagtcggacttcaccgcgctg
ctgaacctgtgggcgtacgtgcgcgagcagcagaacgagctgtcctcctccgcgttccgc
cggctgtgcaaggctgagcacatcaactacctgcgggttcgcgaatggcaggacttgttc
acgcagctgcgccagctggccaagcccctgggcatcaccgtggccgccgcgccgatcgag
ccggccgccaacgaggacgccgtgcacaagtcgctgctctccgggctgctggggcacatc
gggctctacgacgagcgcaagcgcgactacgtcggagcgcgcggcacccgcttcgcgatc
ttccccggctccgggctgttcaagaagtcgccgacctgggtgatggccgccgagctggtg
gagacctcccggctgtgggcgcgcaccaatgcggtgatcgatccggcctgggtggaggag
ctggccccgcacctgctcaagcgcacctattcggagccgcactggtccaagcgcaacggt
tcggtgatgggctacgagaagctcacgctcttcgggctgccgatcgtgccgcgccgccag
ttccactactggcgcgtggacaaggcgctggcccgcgagctgtttatccgccacgcgctg
gtggagggcgactggcgcacacaccacaagttcttcgcgaagaaccgcgcgctgctggag
gaagtcgaggagctggaaacccggatgcgccggcacgatttgcgcatcagcgatgaggac
ctgttcgcgttctacgatgcccggctgccgcaagacatcctctccgagcggcacttcgac
cgctggtggaggaaggcgcgcgccgcggatccggcgctgcttgacttcgatcccgaggcg
ctgctggccgccgacgcgcaggcgctggacgagaccgccttcccgaaaacctgggcgctg
ggcagcatccacctgccgctgagctacgagtacaacccggccgccgccagcggcgagggc
gacggcgtgagcctgaccgtgccggtggtgttcctgaaccagctggatccggcgcggttc
gcctggctgatcccgggcctgcgccacgagctgctcaccgcgctgatccgttccatgccc
aaggcgatccgcaagaacttcgtgcccgccccggacgtggcgggcaaggcgctggcgatg
ctggaggccgatttcgatcccgccaccgacgacctggcccagtcgctggcgctggtgctg
cggcggctgcgcggcatcgtcgtggacccggccgttttcgacttctccacgctgcccgcg
cacctgcgtttcggcttcaccgtcaccgatgcctccggcaaggtgctgggccagggcgac
gacctgggcaagctgcagtacaagctggccgcggccaaccgcgccgcgctggccagcggg
gtcaactcccccggcgcagctcttccgggcaaaccaggcaagccggggatccctgccgca
gccgccaagggcgggcaggacaaaacggccacgggccggcagggcaacaaggccggcaag
ggcacccggggcgcgaagaacgccgcgggggcttgggaccagcaaaagctcgatgcctgg
ccgcagcttgacgccgccggggacacgctgggcgacaggctgccggacaaggtcaccacc
acggtgatgggccagcagatcaccgcgtacccgggcttgatcgcccagggcgagcgcgtg
gacctgacggtgttccgctcggccgtggagcgcgacgcggcgcaccgcaccggcgtgatc
cggctgctgatgctgcgcctgccgccggcggcgaagttcgtgatctcgcacctggacaac
accgagaagctggcgttcacgcagaacccgcacggctcgatcgagcacctgatcagcgac
tgcaccatggcggcggtggacaagctggtgcccgagcagctgccgatggaccgcgcggcg
ttcgaggcgctgttcgaggtggtgcgcgcggagcagatcgacacggtcttctccatcacc
gcggtggtggccaaggtcttcgccgcggccacgcggatctccaaggagctgaaggccacc
cgctcgctggccatgtacgccgcgatcaccgacatccgctcgcagctggagcagctgatc
taccccgggttcatcgccgccaccggtgcggcgcacctgctgcgcctgccgcgctatctg
gcgggcatcgagaagcggctggagaagctcgccggcggcgcggtcacccgcgactcgcag
gcgctggtcgtgatccagaagctggaggacgagtacgacgccgccctggacaaggtcccg
gagggcgcgcgcctgccggcggggctgcgcgaggtgaagtggatgctggaggagatgcgc
atttcgctgttcgcccaggagctgggcaccgcgtattcggtcagcgagaagcgcatccgc
aaggccatcaaggacggcctgtcggcgctgtag
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