Arthrobacter sp. 'calajunan' LS16: AFL94_12145
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Entry
AFL94_12145 CDS
T04078
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arl
Arthrobacter sp. 'calajunan' LS16
Pathway
arl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFL94_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arl03021
]
AFL94_12145
03400 DNA repair and recombination proteins [BR:
arl03400
]
AFL94_12145
Enzymes [BR:
arl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFL94_12145
Transcription machinery [BR:
arl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFL94_12145
DNA repair and recombination proteins [BR:
arl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFL94_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Invasin_D3
Motif
Other DBs
NCBI-ProteinID:
ALD64544
LinkDB
All DBs
Position
complement(2629772..2633662)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNDSSFGLMRINLATADEIRAWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRANVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVNEERRHAEMPNLQAQHDLELRQLANNAEADKKAVAADLEAE
LERLEADGAKNAELNKARTLAEKTVLQIDKRAKAESERLRAVWERFKGLKVADLEGDEGL
YRTMREKYGLFFEGSMGAEAIQKRLENFDLEAEAEDLKQIIDNGKGQKKARALKRLKVVN
AFLANGNSPKGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSHNILKPSDGRPVALPSQDMIIGLHHLTTKREDEIGAGR
VFSSVSEAIMAKDRGELHLNAPIKVRVENFVPSDEQPAPEGWEPGTEALLETSLGQVLFN
DTLPADYPWVSRVAGKDALSDIVNDLAERYPKVVAAATLDNLKDAGFHWATRSGITVAIS
DITSNMNKAEILEPYEERARKVQGSYDKGLISDIERRQDLIDIWTKATDEVAEAMKNGME
ELNTINRMVTSKARGNWLQLRQIAGIRGLVSNPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALKTANSGYLTRRLVDVSQDVIVREEDCGTKRGLTVAIADSSSGIRIKHET
VENSAYTRTLAADVKDAEGNVLATAGSDVGDVLIDELYAAGVDEIRVRSVLTCDSAVGTC
ALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQE
LFEARTPKGVAPMSEVSGRVSIEDDEKQLRVVVTPDNGDEKQAYPVLRRARLLVEDGQSI
VAGTQLTNGTLDPKQVLRVLGPREAQKFLVREVQDVYQSQGVGIHDKHVEVIVRQMLRRV
TVIESGETELLPGELADRSRFTAANRKAVAEGKRPAAGRDEMMGITKASLATDSWLSAAS
FQETTRVLTQAAMEGKEDPLRGLKENVIIGKLIPAGTGLDRYTQVEVEPTDEAKATLFTG
TSAFSSGLYDDALEGGLSPEFRAISMDDYDHGSDFR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgattcctcattcggcctcatgcgcatcaaccttgccaccgcggacgagatc
cgcgcttggagctacggcgaggttaagaagcctgaaaccatcaactaccgcaccctgaag
ccggagaaggacggtcttttctgcgaaaagatcttcggtccttcccgcgactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgaacgctgcggcgtc
gaggtgacccgtgcgaacgtgcgccgcgaacgcatgggccacatcgagcttgctgctccc
gtgacccacatctggtacttcaagggcgttccttcgcgcttgggctacctgctggatctg
gcacccaaggacctggaaaaggtcatctacttcgccgcctacatgatcacttcggtgaac
gaggaacgccgccacgcggagatgccgaacctgcaggcacagcacgaccttgaactgcgc
cagctggccaacaatgccgaggccgacaagaaggctgttgccgccgacctggaagcagag
ctggagcgtcttgaggcagacggcgccaagaacgccgagctgaacaaggcccgcaccctg
gccgagaagaccgtgctgcagatcgacaagcgcgccaaggcggagtccgagcgcctgcgt
gcggtctgggaacgcttcaagggcctgaaggtcgccgacctcgaaggcgacgaaggcctg
taccgcaccatgcgcgagaagtacggactgttcttcgaaggctccatgggcgccgaggcg
atccagaagcgcctggagaacttcgacctcgaagccgaagccgaagatctcaagcagatc
atcgacaacggcaagggccagaagaaggcccgcgccctcaagcgcctgaaggtcgtcaac
gcattcctggccaatggcaactcgccaaagggcatggtgctcgacgccgttccagtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgtttcgccacctcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaataaccgcctcaagcgcctgcttgatctc
ggtgcgccagagatcatcgtgaacaacgaaaagcgtatgctgcaggaagccgtcgactcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggaccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctcggcaag
cgcgttgactactcgggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggtctgcctaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgctaccgc
ccgcaggtgtgggatgttctcgaagagatcattaccgagcacccggtgctgctgaaccgt
gcgcctaccctgcaccgcctgggcatccaggccttcgagccacagctggtcgaaggcaag
gccctgcagctgcacccgctggtttgcggcgcgttcaacgctgacttcgacggcgaccag
atggcagtccacctgccgctgagcccggaagctcaggctgaagcacgcatcctgatgctg
tcctcgcacaacatcctgaagccttcggacggccgtccggtggctctgccctcgcaggat
atgatcatcggcctgcaccacctcaccaccaagcgcgaggacgagatcggcgccgggcgc
gtgttctcctcggtctccgaggccatcatggccaaggaccgcggcgagctgcacctgaac
gccccgatcaaggtgcgtgtcgagaacttcgttccttcggacgagcagccggccccagag
ggctgggagccgggcaccgaagccttgctggagacctcgctgggccaggtgctgttcaac
gacacgctgccggcggactacccatgggtttcccgcgtggccggcaaggatgcgctctcg
gacatcgtcaacgaccttgccgagcgctacccgaaggtcgtcgcggcggcaacgctggac
aacctgaaggacgcaggtttccactgggctacccgctcgggcatcaccgtggcgatctcg
gacatcacctcgaacatgaacaaggcagaaatccttgagccgtacgaggaacgtgcccgc
aaggtccagggttcgtatgacaagggcctgatctccgacatcgaacgccgccaggacctg
atcgacatctggaccaaggccaccgacgaggttgccgaggccatgaagaacggcatggaa
gagctgaacaccattaaccgaatggtgacctccaaggctcgtggtaactggctgcaactg
cgccagatcgccggtatccgtggtctggtgtccaaccccaagggcgagatcatcccgcgt
ccgatcaagtcttcctaccgtgaaggcctgtcggtgctggagtacttcatcgcgacccac
ggcgcccgtaagggcctggcggataccgcgctgaagaccgccaactcgggttacctgacc
cgtcgtctggtggacgtctcgcaggatgtcatcgttcgcgaagaggactgcggcaccaag
cgcggcctgaccgtcgcgatcgccgactccagctcgggcatccgcatcaagcacgagacc
gtggagaactcggcctacacccgtacgctggccgccgacgtcaaggacgctgagggcaac
gtgctggccaccgccggttccgacgtgggcgacgtgctgatcgacgagctgtacgctgca
ggcgtggatgagatccgcgtccgctccgtgctgacctgcgactcggccgttggaacctgt
gcgctgtgctacggccgttcgctggccaccggcaagaccgtggacatcggcgaggcagtg
ggcatcatcgccgcgcagtccatcggcgagcccggtacccagctgaccatgcgtaccttc
cacaccggtggtgtggcatcggccgacgacatcacccagggtctgcctcgtatccaggag
ctcttcgaagcccgtaccccgaagggtgtggctccgatgtcggaggtctccggtcgcgtg
tctatcgaggacgacgagaagcagctgcgtgttgtggtcacaccggacaacggcgacgag
aagcaggcctatccggttctgcgtcgtgcccgtctgctggtggaagatggccagtccatc
gtcgccggtacccagctgaccaacggtacccttgacccgaagcaggtgctgcgagttctg
ggcccacgcgaggcgcagaagttcctggtccgcgaggtccaggacgtgtaccagtcccag
ggtgtgggcatccacgataagcacgtggaagtcatcgtccgccagatgctgcgtcgcgtc
accgtcatcgagtccggcgagaccgagttgctcccgggtgagctggccgaccgttcgcgc
ttcaccgctgcgaaccgcaaggcagtcgccgagggcaagcgtccggccgctggccgtgac
gagatgatgggcatcaccaaggcatcgctggccaccgattcgtggctgtcggcggcttcc
ttccaggaaaccacccgcgtcctgacccaggccgcgatggagggcaaggaagatccgctg
cgcggtctgaaggagaacgtgatcatcggtaagctgatcccggccggtaccggtctggat
cgctacacccaggtcgaggtcgagccgaccgacgaggcaaaggcaactttgttcaccggt
acctcggcattctcctcgggtctctacgacgatgcgctggaaggcgggctgtcgcctgaa
ttccgcgccatctcgatggacgactacgaccacggctcggacttccgctaa
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