Arthrobacter sp. 'calajunan' LS16: AFL94_12355
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Entry
AFL94_12355 CDS
T04078
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arl
Arthrobacter sp. 'calajunan' LS16
Pathway
arl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFL94_12355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arl03019
]
AFL94_12355
03009 Ribosome biogenesis [BR:
arl03009
]
AFL94_12355
Enzymes [BR:
arl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFL94_12355
Messenger RNA biogenesis [BR:
arl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFL94_12355
Ribosome biogenesis [BR:
arl03009
]
Prokaryotic type
rRNA helicases
AFL94_12355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
ALD64577
LinkDB
All DBs
Position
complement(2671032..2672921)
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AA seq
629 aa
AA seq
DB search
MPVNTADTQTTEEPTVTFSELGLDARVLAALADLGYEKPSPIQAATIPLLLDGRDVVGLA
QTGTGKTAAFALPALSRMAELADLNGPATTPQILVLAPTRELALQVAEAFTSYAKYLPDF
TVLPVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHINKGSLDLSNLQYMVLDEADEMLRM
GFAEEVDKILEATPEEKQVALFSATMPRTIRRIASEYLRNPQEVAVKSKQTTGANITQRY
LQVMGAHKLDAMTRILESEEFDGVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQR
ERTVENLRSGKIDILVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGD
AILFMTPREKYLLRAIEKATRQSVTQMQLPSLDSVNNRRIQKFTDRIDATITGQDLGTFR
EIVEQFAAQHEDLDHLEIAAALALMAQGGRPLLMTEPVMPPAKKARLERDRADRGDRGER
GPRRGKTAAEGNAMYRLAVGRRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLVELP
AELSKDQWRALSNTRIGGEPINLELDSGRKPRRDDDSDRGGYRGGRGGSFNDRKRSGGFR
GDDRRGGGDKRFGGRGKDRFSDSARRRDY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtaaacactgccgacacccagaccaccgaggaaccaacggttaccttcagcgaa
cttggtcttgatgcccgcgtgcttgctgcactggccgacctgggctacgaaaagccgtcg
ccgatccaggccgccaccattccgctgctgctcgacggccgcgacgttgtcggtctggcc
cagaccggtaccggcaagactgccgctttcgcattgcctgcgctctcccgcatggcagag
ctggccgacctgaacggtccggccaccaccccgcagatcctggttctggcaccgacccgc
gagctcgcgctgcaggttgccgaggctttcacctcctacgccaagtaccttcctgacttc
accgtgctgcctgtctacggcggctcgccatacggcccgcagctggccggcctgcgccgc
ggcgcacaggttgtcgtcggcaccccgggtcgcgtgatcgaccacatcaacaagggttcc
cttgacctgtccaacctgcagtacatggtgctggacgaggccgacgaaatgttgcgcatg
ggcttcgccgaagaggtcgacaagatcctggaagccaccccggaagagaagcaggttgcc
ctgttctcggccaccatgccgcgcaccattcgccgcattgcttcggagtacctgcgcaac
ccgcaggaagtcgccgtcaagtccaagcagaccaccggcgccaacatcacccagcgttac
ctgcaggtcatgggcgcccacaagctggacgccatgacccgcatcctcgagtccgaggaa
ttcgacggcgtcatcgccttcgtgcgcaccaagatggccaccgaggacctcgccgacaag
ctgaaggcccgcggcttcaccgctgcagccatcaacggcgacatcccgcagcagcagcgc
gagcgcacggtcgagaacctgcgttcgggcaagatcgacatcctggtcgccaccgacgtt
gccgcccgcggcctggacgtcgagcgcatctcgcacgtcgtgaacttcgatatcccgcac
gacaccgagtcctacgtgcaccgcatcggccgtaccggccgcgcaggccgcaagggcgac
gcgatcctcttcatgaccccgcgtgagaagtacctgctgcgcgccatcgagaaggctacc
cgccagtcggtgacccagatgcagctgccttccctggattcggtgaacaaccgccgcatc
cagaagttcaccgaccgcatcgatgcaaccatcaccggccaggacctgggcaccttccgc
gaaatcgtggagcagttcgccgcccagcacgaggacctggaccaccttgaaatcgctgcg
gccctggccctcatggcccagggcggccgcccgctgctgatgaccgagccggtcatgcca
ccagccaagaaggcccgcctggagcgcgaccgcgcagaccgtggcgatcgcggagagcgc
ggcccacgccgtggcaagacggccgccgagggcaacgccatgtaccgtctggcagttggc
cgccgcaaccgcgtgcagccgggttccatcgttggcgcactggccaacgagggcggcttc
aactcctcggaaatcggcggcatcgagatccgttcggaccacaccctggtcgagctgcca
gccgagctgagcaaggaccagtggcgtgcactgtccaacacccgcatcggcggcgagccg
atcaacctggagctggactccggccgcaagccgcgccgcgatgacgactcggatcgcggc
ggttaccgcggcggacgtggcggcagcttcaacgaccgcaagcgctcgggcggcttccgc
ggcgatgaccgccgtggcggcggcgacaagcgcttcggcggacgaggcaaggatcgcttc
agcgattcggctcgtcgccgcgactactaa
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