Arthrobacter sp. PAMC 25486: ART_4054
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Entry
ART_4054 CDS
T03487
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arm
Arthrobacter sp. PAMC 25486
Pathway
arm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ART_4054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arm03400
]
ART_4054
Enzymes [BR:
arm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ART_4054
DNA repair and recombination proteins [BR:
arm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ART_4054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIY03653
UniProt:
A0A0A1D390
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All DBs
Position
4252766..4256419
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AA seq
1217 aa
AA seq
DB search
MSLAGLRSALAEDPLFARVRGFAAADPATRSTDVAFSAPAGMRAVLLAEVADGLSDRSAA
APGVVLAVTATGREAEDTVAALRSYLPDAAIAEFPSWETLPHERLSPRSDTVGRRLSVLR
RLAHPEHDAGARLRVVVAPIRAVVQPLVAGLGELVPVRVRVGEDIPFGELIKRLSDAAYA
RVDMVTHRGEFAVRGGILDVFPPTDNHPVRVEFFGDEVESMRWFSIADQRTLTSVKGNIS
HPVELYAPPCREILITPTVMSRAAKLKDLMPGAAGMLEKIAGGIAVEGMESLAPALVDGM
VPLSSLLPAGSIAVVLDPEKVSARAHDLESTNEEFLEAAWSTASDGGSAPLDLSQASGGG
AGVDLASAGFKSLAETREGALEHGLSWWTMSALAQDEELEPATDVVNLHAREPRGYRGDV
AEMMEFIGARVKDQWRVVVATQGPGPAQRLAELFHEANIPASRVESLDAPPQPGIIEVTT
ADTGRGFVLDSLKLGLLTEADLLGRASAVSTRDMRKMPSKRRNAVDPLQLEAGDYVVHEQ
HGVGKFVELIQRKVPGAGVGGAAGLREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTAYVG
GDAPALSKMGGSDWAATKGKARKAVKEIAGELIRLYSARMASRGHAFGPDTPWQAELEEA
FPYVETPDQLVAINEVKADMEKEVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAILV
PTTLLAQQHYETFNERFSGFPVRVAPLSRFQTTKESKEIIEGVRTGSVDVVIGTHRLLSK
DFAFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSMTGIRETSTL
ATPPEERHPVLTYVGAHSDKQVGAAIRRELMREGQVFYVHNRVKSIERTAAHIQQLVPDA
RVAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVEQANNYGLSQL
HQLRGRVGRGRERAYAYFLYPADKPLGEVALERLKAVAAHNELGAGMALAMKDLEIRGAG
NLLGGEQSGHIQGVGFDLYIRLVGEAVAEFRGEGEERVAEMKIELPVNAHLPHDYVPGER
LRLEAYRKLAAAVTVEAIAEVEDELIDRYGELPPAAVNLLAVAHFKVLARAAGLHDVALQ
GNFIKFAPAELPESKVMRLTRMYPGAMVKPALNAVLIPKPKTARIGGRDLADAEVLKWAQ
GVLEAIFEVTPETMAAP
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgcagggttgcggagcgcacttgccgaagatccactgttcgcccgggtccgc
ggcttcgcggccgccgaccccgccacccgcagcaccgacgtcgccttcagtgcccccgcc
ggcatgcgcgccgtgctgctggcggaagtggccgacggcctgagcgacagatctgccgcc
gcccccggcgtggtcctcgccgtcactgccaccggccgcgaggccgaggacactgtggcc
gccttgcgctcctaccttcccgacgccgcaatcgccgagtttcccagctgggaaaccctc
ccgcacgaacggctttccccccgctccgacaccgtgggccgccgtctctccgtgctgcgc
cgcctggcccatcccgagcacgacgccggagcccggcttcgtgttgttgtggcacctatt
cgtgcggtcgtccagccgctggtggccggcttgggtgagctggttccggtgcgggtgcgc
gtcggcgaggacattccgttcggtgaattgatcaagcgcctctccgatgccgcctacgcc
cgtgttgacatggtcacgcaccgaggcgagtttgccgtccgcggaggcatcctcgacgtc
ttcccgcccactgacaaccaccccgtccgcgtcgagttctttggcgacgaggtggaatcg
atgcgctggttcagcatcgccgaccaacgcacactcaccagcgtcaagggcaacatctcc
cacccggttgagttgtatgcgcccccgtgccgggaaatcctgatcacccccaccgtcatg
agccgggccgcgaagctcaaggacctgatgcccggcgccgcaggaatgcttgaaaagatc
gccggcggcatcgccgttgagggcatggaatccctcgcgccggcactggtggacggcatg
gtaccgctgtcctcgctgctgcccgccggttccatcgccgtggtgctggatccggaaaag
gtcagcgcccgcgcccacgacctggaatccaccaacgaagaatttcttgaggcggcctgg
tccacggcgtccgacggcggcagtgccccgctggacctgtcgcaggccagcgggggaggg
gccggagtcgaccttgcctcggcaggattcaaatccctggccgaaacccgtgagggtgcg
ctggagcacgggctgagctggtggaccatgagcgcgctggcccaggacgaggaacttgaa
ccggccaccgacgtggtgaacctgcacgcccgcgaaccgcgcggctaccgcggcgatgtg
gcggagatgatggaattcatcggcgcccgcgtcaaggaccagtggcgcgtggtggttgcc
acccaggggcccggcccggcccagcgcctggccgagctgttccacgaagccaacatcccg
gcgtcgcgcgtggaatccctggatgcccccccacagccgggcatcatcgaggtgaccacg
gccgacaccgggcgcggctttgtgctcgattcgctgaagctggggctgctgaccgaagca
gatctgctgggccgcgcgtccgccgtctcaacccgggacatgcgcaagatgccctccaag
cgcaggaacgccgtcgaccccctccagctggaggcaggggactatgtggtccacgagcag
cacggtgtgggcaagtttgtggagctgattcagcgcaaggtgcccggggcgggtgtgggc
ggtgcggccgggctgcgcgaatacctggtgctggaatatgcgccgtccaagcgcggggcg
ccgggggacaggctgtttgtgcccaccgaccagctggaccaggtgacggcgtatgtgggc
ggggatgcgccggcgctgtcgaagatgggcggctcggattgggctgccacgaagggcaag
gcgcgcaaggcggtcaaggagattgccggggagctgatccggctgtactcggcgcgcatg
gccagccgcgggcacgcgtttgggccggatacgccctggcaggccgagctggaggaggcg
ttcccgtatgtggagacgcccgaccagctggtggccatcaacgaggtcaaggccgacatg
gagaaggaagtccccatggaccggctgatctccggcgacgtgggctacggcaagaccgaa
attgctgtccgggccgcgttcaaggcggtccaggacggcaaacaggtggccattctggtg
cccactacgttgctggcacagcagcattacgagacgttcaacgagcgcttttccggcttc
cctgtgcgggtggcgccgctgtccaggttccagacgacgaaggagtccaaggagatcatc
gagggtgtccgaacggggtccgtcgacgttgtcatcggcacgcaccggctgctgtccaag
gactttgcgttcaaggacctgggcttggtgattgttgacgaggagcagcgcttcggtgtg
gagcacaaggaggcgctgaagaagatgcgcaccaacgtggacgtgctggccatgagtgcc
acacccattccgcgcaccctggagatgtccatgacgggcatccgcgaaacctcaaccctg
gccaccccgccggaggaacgccacccggtgctgacctatgttggtgcgcacagcgacaag
caggtgggggccgcgatccgccgcgagctgatgcgcgaggggcaggtgttttatgtgcac
aaccgggttaaatcgattgaacggacggcggcgcacatccagcagctggtgccggacgcg
cgggtggcggtggcgcacgggcagatgtccgagtcccggctggagcagatcattgttgac
ttctgggaaaagcgctttgacgtgctggtgtgcaccaccatcattgagaccggactggac
atctccaacgccaacacgctgattgtggagcaggccaacaactacgggctgtcgcagctc
caccagttgcgcgggcgtgtgggccgtgggcgtgaacgcgcctacgcgtacttcctgtac
ccggccgacaagccgctgggcgaagttgccctggagcggctgaaggccgttgccgcgcac
aacgagctgggtgcgggcatggccctggccatgaaggaccttgagatccgtggtgccggc
aacctgctgggcggggaacaatcgggccacatccagggtgttggctttgacctgtatatc
cgtttggtgggcgaggctgtggccgagttccgtggtgagggcgaggaacgggtggcggag
atgaagatcgagctgcccgtcaacgcccacctgccgcacgattatgtgccgggggagcgg
ctgcgcctggaggcctaccgcaagctggccgccgctgtcacggttgaggccatcgccgaa
gttgaggacgagctcatcgaccggtacggtgagctgccgccggccgccgtgaacctgctg
gctgtggcgcacttcaaggtgctggcccgtgctgccgggctccatgatgttgcactgcag
gggaacttcatcaagttcgctccggctgagctgcccgaatcaaaggtcatgcgcctgacg
cgcatgtacccgggagctatggtgaagccggcgctgaatgcggtgctgattcccaagccg
aagactgcgcgtattggcggccgggacctggccgacgccgaggtgctcaagtgggcgcag
ggcgtgcttgaggcgatcttcgaggtgaccccggagacgatggcggcaccgtag
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