Arthrobacter sp. YN: CGK93_04380
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Entry
CGK93_04380 CDS
T05171
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
arn
Arthrobacter sp. YN
Pathway
arn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGK93_04380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arn03019
]
CGK93_04380
03400 DNA repair and recombination proteins [BR:
arn03400
]
CGK93_04380
Enzymes [BR:
arn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGK93_04380
Messenger RNA biogenesis [BR:
arn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGK93_04380
DNA repair and recombination proteins [BR:
arn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGK93_04380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
MFS18
WHD_PriA
Motif
Other DBs
NCBI-ProteinID:
ASN19014
LinkDB
All DBs
Position
936159..938324
Genome browser
AA seq
721 aa
AA seq
DB search
MANNSPNAAVSVQSPTQQQALACLRELVGHPEAQFHDGQYEAIEALVDAGRRALVVQRTG
WGKSAVYFVASLLLRRRGAGPTLIVSPLLALMRDQVAAAARAGVRAVAINSANALEWDTV
LAQLAADEVDVLLVSPERLTNPSFRENQLPELIRRTGLLVIDEAHCISDWGHDFRPDYRR
IADLIAQLPASVPVLATTATANSRVVHDIEEQLGDGVLTIRGALGRESLRLGVLTLPDSR
DRLGWLLTHLADMPGSGIIYTLTVSAAEDTARLLAEAGHNVLSYTGRTDPADRERAEQLL
KDNQVKALVATSALGMGFDKPDLGFVIHLGAPSSPVAYYQQVGRAGRGAANADVLLLPGS
EDREIWQYFATASMPSAEKANAVLTVLGEAGSALSTVALEARVDLRRTPLELLLKVLAVD
GAVERVGGGWRSTGVPWNYDAERYARIAEARVDEQDSMVIYQDTAGCRMEYITSVLDDET
AAACGRCDNCAGRWFPVDVAASAADAAGQTLRRAGIAVEPRLQWPSGMDRLGVAVKGKIK
PDESVSEGRILARLTDLGWGGSLRELFAAGAPDRAVDPAMLQACVQVLREWSGAEGGTPW
SGAGRPAAVVSVPSRSKPQLVESLAQGIAGIGRMPYLGQLQPQHGGPTGARGGNSAYRLA
GVWDRLVVGPDLAQALAGLGGQPVLLVDDLIDSRWTMTVSARALRHAGVGAVLPLALAQA
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaactccccgaacgctgccgtttccgtgcaatcacctacccagcaacaggca
ttggcatgtctgcgggagttggtggggcacccggaagcccaattccatgacggccagtac
gaggccatcgaagcgttggttgatgccggccgccgggccttggtggttcaacgtaccggt
tgggggaaatcggctgtctacttcgtcgcctcactgctgctgcgcaggcggggtgcgggc
cccactctgattgtttcgcctctgctggcgctcatgcgggaccaggttgccgcagccgca
cgggcaggagtccgggctgttgccatcaactccgccaatgccctggaatgggacaccgta
ctggcccaactggccgctgacgaggtggatgtcctcctggtctctcctgagcggctgacc
aacccctccttccgcgagaaccagctcccggaactcatccgccgcaccggccttttggtc
attgatgaggctcactgtatttcggactggggacatgacttccggccggattaccgccgg
attgctgacctcattgcacaactgccggcgtccgttcccgtcctggccaccacagccacc
gccaattccagggtggtccatgacatcgaggagcaactcggtgatggagtactgaccatc
cgtggcgccctgggccgtgaatcgctgcgcctgggagtcctgacactgcccgattcccgg
gaccgcttgggctggttgctgacgcatctggcagatatgcctggcagcggcatcatctac
acgctcacggtctcggcggctgaggatactgccaggctcctggccgaagccggacacaat
gttctctcctacacgggacgcactgaccctgccgatcgagagcgtgcggagcaactcctt
aaggacaaccaagtgaaggccctcgtggccacctccgccctgggaatgggattcgacaag
cccgacctgggctttgtcatccacctcggcgcgccgtcctcgcctgtggcctactaccaa
caagttggccgtgcaggacgtggagcggccaacgcagatgtcctgttgcttcccggctcc
gaggaccgtgaaatctggcagtactttgccacggcctccatgccgtcggccgagaaagcg
aacgctgtcctcactgtcctcggcgaagccggttcagcgctgtccacggtggctctggaa
gccagggtggaccttcgccgaacaccgctggagctcctcctcaaagtcctggcggtcgat
ggagccgtggaacgcgttggtgggggctggcgctccaccggggtcccgtggaactacgac
gccgagcgctacgcacgtattgccgaggcgcgggtggacgagcaggattccatggtgatc
taccaggacaccgccgggtgccggatggaatacatcacctcggtgttggacgacgaaacg
gctgccgcgtgtgggcgctgtgacaactgcgccggccgatggttccccgtggacgtggca
gcctccgccgccgatgccgcaggacagactctgcgccgggccggaatagccgtggaacca
cgccttcaatggcccagcggaatggatcggctcggagtggctgtcaagggaaagatcaag
cccgatgagagtgtgtccgaggggcggattcttgccaggctcaccgaccttggctggggt
gggtcgctccgggaactgttcgccgccggggcgccggaccgggcagtggatccagccatg
ctgcaggcatgtgtccaggtactccgcgaatggtcaggcgcggagggcgggactccgtgg
agcggagccggtcgtccggcagccgtggtcagtgttccttcgcggagcaagccgcagttg
gtcgagtccttggctcaaggaatagcgggcatagggcggatgccctacctcggacaactg
caaccccagcacggcgggcccaccggcgcacgtggaggaaacagtgcgtaccggctggca
ggagtgtgggacaggctggtggtcggtcccgatctcgcccaggctttggcaggcctcggt
ggccaacccgtgctgttggtcgatgacctcattgacagccgctggaccatgacggtctcg
gccagggcgttgcgccacgccggcgtgggcgcggtgctgccgctcgcactggcccaagcc
gggtag
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