Arthrobacter sp. YN: CGK93_04925
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Entry
CGK93_04925 CDS
T05171
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
arn
Arthrobacter sp. YN
Pathway
arn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGK93_04925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arn03019
]
CGK93_04925
03400 DNA repair and recombination proteins [BR:
arn03400
]
CGK93_04925
Enzymes [BR:
arn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGK93_04925
Messenger RNA biogenesis [BR:
arn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGK93_04925
DNA repair and recombination proteins [BR:
arn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGK93_04925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_RecD
Cas3-like_C_2
PcrA_UvrD_tudor
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ASN19105
UniProt:
A0A221NHQ9
LinkDB
All DBs
Position
1062197..1063855
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AA seq
552 aa
AA seq
DB search
MSDDLALRALAASSFSLPELRDGQLAGMSALAGGRDVLAVMPTGYGKSATYQVAAQYLYQ
QTGRPAVVVSPLIALQEDQLDGLMEDLGHHAAVAINSSRSDSEVETAWQAAESGKATFLF
LAPEQLAKQATVERIAALDITMFVVDEAHCVSSWGHDFRPDYLDLGTVREQLGNPPVVAL
TATASPPVRDEIVERLGMKDPLVLIRGFDRPNISLTVVRHQEDKAKRTAVLDHVASLAAA
KGMGLLYVATRKDSEKYAAKLADAGLRAEAYHAGRSDTDRETIHDSFMDDQVDVVVATTA
FGMGIDKPNVRFVVHADIPASLDSYYQEIGRAGRDGGSAEAILHYRAEDLGLRKFFSTHS
PDPDALTAVLKVIKNAGAPAPKTALVELTGFPARRITALVNQLEEVGAVSTGKRGTRLES
KARVSTLVGRAVVRAEARQRVEQSRLTMMRAYAETDSCRRQFLLGYFGEHLPEPCGNCDP
CADRHDDDTLDRAPASDTGETFPLQSTVVHKEWGQGLVMRHEDDVITVLFEQEGYKTLSR
SAVVEHGLLKPA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaccttgccctgcgcgccctcgcggcgtcttctttttcccttcctgaactg
cgtgatggccaactcgcaggtatgagcgccctggccgggggccgtgatgtcctggccgtc
atgcccaccgggtacggcaaatccgccacctatcaagtggcggcacagtacctttaccag
cagacgggacgccccgccgtcgtggtgtctcctctcattgccctgcaggaagaccagctt
gacgggctcatggaggacctgggccaccatgccgccgtcgccatcaattcttcccgcagc
gattccgaggtggagaccgcctggcaggcggccgaatccggcaaagccaccttcctgttt
cttgctccggagcaactggccaagcaagcgacggtagaacggatcgccgcgctggacatc
accatgttcgtggtggacgaggcccattgcgtgtcctcctggggccatgacttccgcccc
gactacctcgacttgggcaccgtccgcgagcagttgggcaacccacccgtggtggcgctg
actgccaccgcctccccgccggtgcgcgacgaaatcgtggaacggctgggaatgaaagac
ccgttggtcctgatccgcggcttcgaccggccaaacatcagcctcacagtggtccggcac
caggaagacaaagccaaacgaacagccgtgctggaccacgttgcctccctggctgcggcg
aaagggatggggctgctgtacgttgccacccgcaaggacagcgaaaagtacgcagcaaaa
ctggcagatgccgggctccgtgcggaggcgtatcacgcgggcagatcggacactgaccgg
gagaccatccacgattcgttcatggatgaccaagtggatgtagtagttgccaccacggcg
ttcggcatgggcattgacaagcccaacgtgcggtttgtggtgcatgccgacattccggcg
tcactggactcgtactaccaggagatcggccgggccggccgggacggcggttccgccgag
gcgatcctgcattaccgggcggaggacctggggctgcgtaagttcttcagcacccattcc
ccggaccccgatgcgctcacggcggtgctgaaggtcatcaagaatgccggcgctcctgcc
ccgaagaccgcattggtggagctcacgggcttccccgcccggcggatcaccgcactggtg
aaccagctggaggaagtgggtgccgtcagcaccggcaagcgcggaacgcgccttgaatcg
aaagccagggtgtccaccctggtggggcgcgccgtcgtacgtgcggaggcccggcagcgc
gtggaacagtcgcggctcaccatgatgcgcgcctatgcggagacagacagctgccgacgc
cagttcctgctgggctacttcggtgagcacctgccggaaccttgcggcaactgcgacccg
tgcgctgacaggcacgacgacgacacgctggaccgggcgcccgcctccgacaccggggag
acgtttcccttgcagtccacggttgtacataaggaatgggggcaaggcctggtgatgcgc
cacgaggatgatgtcatcacggtcctgttcgaacaggagggctacaaaacgctgtcccgc
tccgccgtcgtcgagcatgggctgctgaagcctgcctaa
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