Rhizobium rhizogenes K599: B0909_01395
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Entry
B0909_01395 CDS
T04767
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aro
Rhizobium rhizogenes K599
Pathway
aro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0909_01395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aro03019
]
B0909_01395
Enzymes [BR:
aro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0909_01395
Messenger RNA biogenesis [BR:
aro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0909_01395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
CMS1
AAA_19
Flavi_DEAD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AQS61067
UniProt:
A0AAN2A345
LinkDB
All DBs
Position
1:2044166..2045635
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AA seq
489 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTAIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGDIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIEIPVASGERPAGLASPSRGNNNRGRNNNGGQQRGPREGGRHNGESRPSRHHAP
READNDLEVTSDFKRVKQAEGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRAS
GNGHRGRNR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagatcgtggccagcgttacccagctt
ggctatacgacccctaccgccattcaggcaaaggccattcctctgctgctcgaaggccgt
gacctgatcggcctcgcacagaccggcaccggcaagaccgccgctttcggcctgcccatc
atcgaaatgctgatgaagcaggcggaccgtccggcaaaccgcacctgccgcaccctcatc
cttgcaccgacccgcgagctggtgaaccagatcggcgaaaacctgcgctccttcgtgaag
aagacgccgctgcgtatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctg
cagctggaaaagggcacggatatcctcgtggcaacccccggccgcctgctggacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgcttgacgaagcggaccag
atgctcgatctcggcttcatccacgatctgcgcaagatttcgaagatggtgccggccaag
cgccagacgctgctcttctccgccaccatgccgaaggcgattgccgatctggcccacagc
tacctgaccgatcctctcaaggtggaagtaaccccgcccggcaaggcagccgacaaggtg
gaacaatatgtccatttcgtcgccggcaagaacgacaagaccgatctcctgaagaagtcg
ctgaacgagaacccggatggccgcgccatcgttttcctgcgcaccaagcacggcgcggaa
aagctctacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgggcgctgaagggcttcaaggatggtgacatcaaggtgctg
gtcgcaaccgacgtcgccgcccgcggcatcgacatcccggccgtcacgcacgtcttcaac
tacgacctgccggaagtgcccgatgcctatgttcaccgcatcggccgcaccgcccgcgcc
ggtcgggacggcatcgccattgcgttttgcgcaccggacgaaacccgcctgctgcacgat
atcgaaaagctgatgaagatcgaaatcccggtcgcatcaggcgaacgtccggccggtctg
gccagcccctcgcgcggcaacaacaatcgtggccgcaacaataatggcggccagcagcgt
ggcccgcgcgaaggcggacgtcacaacggcgaatcccgcccgtcccgtcaccatgcgccg
cgcgaagcggataacgaccttgaagtcacctccgacttcaagcgcgtgaagcaggctgaa
ggcgacgcaggccgcccggcaggcccgcgcaagcaccgccgcccggcccgcaagcccggc
ggcagcggcgccaaccgccacgcacctgctggcggcaacggccaggaaaagcgcgcttcc
ggcaacggccatcgcggccgcaaccgttaa
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