KEGG   Rhizobium rhizogenes K599: B0909_11185
Entry
B0909_11185       CDS       T04767                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
aro  Rhizobium rhizogenes K599
Brite
KEGG Orthology (KO) [BR:aro00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aro03400]
    B0909_11185
Enzymes [BR:aro01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B0909_11185
    5.6.2.6  RNA 3'-5' helicase
     B0909_11185
DNA repair and recombination proteins [BR:aro03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    B0909_11185
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 PSD4
Other DBs
NCBI-ProteinID: AQS63335
LinkDB
Position
1:132986..135505
AA seq 839 aa
MKHAESPISGTHVGSLPLPFQKWFVEKGWSPRAHQLELMARAHGGENMLLIAPTGAGKTL
GGFMASLTDLAERGKAPPGSGFVGVHTLYISPLKALAVDIERNLTKPVSEMGLPISIETR
TGDTPQSKRQRQKINPPDILLTTPEQVSLLLANKEAERFFRDLKYVVLDELHSLVTSKRG
HLLSLALARVRRHAPDVRFIGLSATVAEPMDLRRYLAPQGQGEPPAGLITVEGGAKPDIS
ILHTQERIPWSGHSARYAMKDLYAALKDHQTTLIFVNTRSQAELIFQELWTINDDNLPIA
LHHGSLDAGQRRRVEAAMSENRLRAVVATSTLDLGIDWGDVDLVVHVGAPKGASRLAQRI
GRANHRMDEPSKAILVPANRFEVMECRAALDANYIGAQDTPPIAEGALDVLAQHVLGMAC
AEPFDAEDLYREVTSASPYADLPRLTFDRVVDFTATGGYALRTYERYARIRQMKDGRWRV
SNPAVAQQYRLNLGTIVEAAELNVRMVKRNAKGTVGRGGMSLGKVEEYFLEQLVQGDTFL
FAGKVLRFEGIRENECLVSQAFSMDPKIPSYAGGKFPLSTYLADQVRSMLADPTRWQALP
DQVRDWLAIQKEKSIIPKREELLVETFPFRKRFFMVMYPFEGRLAHQTLGMLLTRRLERA
GAKPMGFVATDYSLAIWAMEDIGLRLKSRRLSLANLLDEDMLGDDLEAWLDESFMLKRTF
RNCAVISGLIERRHPGKEKTGRQVTVSADLIYDVLRSHEPDHILLEATRRDAAAGLLDIG
RLGDMLKRIKGHTTHRALEHVSPLAVPVMLEIGRETVAGEAMDDVLAEAADELIAEAMS
NT seq 2520 nt   +upstreamnt  +downstreamnt
gtgaaacacgccgagtcccccatttccggcacgcatgtcggttccttgccccttccattc
cagaaatggtttgtcgaaaaagggtggtctccgcgcgcccatcaattggagctgatggcg
cgggcgcacggcggtgaaaacatgctgctgatcgcgccgacgggcgcgggcaagacgctg
ggcggcttcatggcttcgctcaccgatctggcggagcgcggcaaggcgccgccgggctcc
ggcttcgtcggcgtgcacacgctttatatctcgccgctgaaggcgctggcggtggatatc
gagcgcaacctgacgaagcccgtctctgaaatgggcctgccgatctccatcgaaacccgc
accggcgatacgccgcagagcaaacgccagcgccagaagatcaacccgcccgatattctc
ctgacgacaccggaacaggtctcgctgctgcttgccaataaagaggccgaacggtttttc
cgagacctcaaatatgtggtgctggatgagctgcattcgcttgtcacctccaagcgcggc
cacctgctgtcgctggcactcgcgagggtgcgccggcatgcgcccgatgtgcgcttcatc
ggcctttccgccaccgtggcggagccgatggatttgcgccgttatctcgcgccgcagggg
cagggggagccgcccgccggcctgatcaccgtcgaaggtggggcaaagccggatatttcc
atcctgcatacgcaagagcgcatcccatggtccggccattcggcgcgttacgccatgaag
gatttgtatgctgcgctgaaggatcaccagacgacgctgatcttcgtcaacacccgctcg
caggcggagctgatcttccaggaactctggaccatcaatgacgacaatctgccgattgcg
ctgcatcacggttcgctggatgccggccagcgccgcagggtggaagcggccatgtcggag
aacagattgcgcgccgtcgtcgccacctcgacgctcgatctcggcatagactggggcgat
gtcgacctcgtcgtgcatgttggcgcgccgaagggtgcaagccgccttgcccagcgtatc
ggccgcgccaatcaccgcatggacgagccgtcaaaagcgatcctcgttcccgccaaccgt
ttcgaggtgatggagtgccgggcggcgctcgatgccaattacattggtgcgcaggacacg
ccccccattgccgaaggagcgctcgatgttctcgcccagcatgtgctcggcatggcctgc
gccgaacctttcgatgccgaagatctctatcgtgaagtaacgagcgcttcgccctatgcc
gacctgccgcgcctcaccttcgaccgggtggtggatttcaccgcgacaggcggttatgcg
ctgcgcacctatgaacgttacgcccgcatccgccagatgaaggacggtcgctggcgcgtc
tccaatccggcggtcgcacagcaatatcgcctgaacctcggcactatcgtcgaggccgcc
gaactcaatgtccgcatggtcaagcgtaatgccaaaggcacggtcggccgtggcggcatg
tcgctcggcaaggtcgaggaatatttcctcgagcagctggtgcagggcgatacgttcctg
tttgccggcaaggtgctgcgcttcgaaggtatccgcgagaatgaatgcctggtgtcgcag
gccttctccatggacccgaagataccctcctatgccggcggcaagttcccgctctccacc
tacctcgcggatcaggtgcgctccatgcttgccgatcctacccgctggcaggcgcttccg
gatcaggtgcgtgactggctggcgatccagaaggaaaaatcgatcatccccaagcgtgag
gaactgctggtcgagacgttccccttccgcaagcgcttcttcatggtcatgtatcccttc
gagggacggctggcgcaccagacgctgggcatgcttctgacgcggcggctggaacgggcc
ggcgcaaaacccatgggtttcgtcgccaccgattattcgctcgccatctgggccatggaa
gacatcggcctgcggctgaaatcccgccgcctgtcgctggcaaatcttctcgatgaggat
atgctgggcgatgatctggaggcatggctggacgaatccttcatgctgaagcgcactttc
cgcaactgcgccgtcatttccggcctcatcgagcgccgtcatccgggcaaggaaaagacc
ggccggcaggtcacggtctccgccgatcttatttatgacgttcttcgcagccatgagccg
gatcatatactgctggaagcgacgcggcgcgatgcggcggcgggacttttggacattggc
cgtcttggcgatatgctgaagcgaatcaagggccacaccacccaccgcgcgctggaacat
gtctcgccgcttgccgttccggtcatgctggaaatcggccgcgagacggttgcgggcgag
gcgatggacgatgtgcttgccgaggccgccgacgagctgatcgcggaagccatgtcctga

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