Rhizobium rhizogenes K599: B0909_11860
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Entry
B0909_11860 CDS
T04767
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aro
Rhizobium rhizogenes K599
Pathway
aro03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B0909_11860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aro03400
]
B0909_11860
Enzymes [BR:
aro01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B0909_11860
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B0909_11860
DNA repair and recombination proteins [BR:
aro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B0909_11860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AQS62841
UniProt:
A0AAN2A5N1
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All DBs
Position
1:3000500..3001396
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AA seq
298 aa
AA seq
DB search
MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPEDFAALIEGKAILSLGRRAKYL
LIELEDGLTIVAHLGMSGSFRIEAEVDEAGNTSGAFHYARSKDGKHDHVVFHLERGGERA
CVVYNDPRRFGFMHLVERNRLDLYPAFAELGPEPTGNALSADYLASRFDGKSQPLKSTLL
DQKVIAGLGNIYVCEALWRAHLSPLRAAGTLVTKTGKPKAQLVELTEKIRDVIADAIAAG
GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaagtcgaaaccgtcaggcgcggcctcgccccagccatggaaggc
gcaagggtccgcaagctccatcttggccgcccggatctgcgttttccgtttccggaagat
ttcgcggcgcttattgaaggcaaggcgatcctgtctctcggccgccgggcgaaatacctc
ctgatcgagctggaggacgggctgaccatcgttgcccatctcggcatgtccggttcgttc
cgcatcgaggcggaagtggatgaagccggcaatacgtccggcgcttttcattatgcccgc
tcgaaggacggcaagcacgaccatgtcgtctttcatctggaaaggggcggagagcgtgcc
tgtgtcgtctataatgatccgcgtcgcttcggcttcatgcatctggtggagcgcaacagg
cttgatctttacccggcctttgcggagctggggccggaaccaacaggcaatgcgctgagc
gccgattatctggcgagccggttcgatggcaaaagccagccgttgaaaagtacgctgctg
gaccagaaggtgattgccggtctcggcaacatctatgtctgcgaggcactgtggcgcgcc
catctttcacccctgcgggcggcgggaacactggtcacgaaaaccggcaaacccaaagcg
cagctagttgaactgacggagaagatccgcgatgtcatcgcggatgcgatcgccgctggc
ggctcttccctgcgcgaccatatccagacggacggaacgcttggttattttcagcattcc
ttttcggtctacgatcaggagggccagccttgccggacacccggctgcgggggtacggtt
gaaagagtggtgcaggccggtcgttcgaccttttattgcgccgcctgccagaagtga
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