Athalia rosae (coleseed sawfly): 105683309
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Entry
105683309 CDS
T09776
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03022
Basal transcription factors
aroa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105683309
09124 Replication and repair
03420 Nucleotide excision repair
105683309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aroa03021
]
105683309
03036 Chromosome and associated proteins [BR:
aroa03036
]
105683309
03400 DNA repair and recombination proteins [BR:
aroa03400
]
105683309
Enzymes [BR:
aroa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105683309
Transcription machinery [BR:
aroa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105683309
Chromosome and associated proteins [BR:
aroa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
105683309
DNA repair and recombination proteins [BR:
aroa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105683309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
AAA_11
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
105683309
NCBI-ProteinID:
XP_012251254
LinkDB
All DBs
Position
7:16089640..16093980
Genome browser
AA seq
759 aa
AA seq
DB search
MKISVDGLIVYFPYDYIYPEQYAYMLELKRGLDARGHCLLEMPSGTGKTVTLLSLIVAYM
LEHPLEVTKLIYCSRTVPEIEKVIEELKNLMEYYEKEDNVKPKIVGLVLSSRKNLCIHPE
VSKEREGKIVDGRCHSLTASYIRERHNYDDSTPVCNFYEGFDMEGREQVVPAGIYSLDDL
KEYGRDRNWCPYFLARFTILHAHIVVYSYHYLLDPKIAESVSKELNKSSVVVFDEAHNID
NVCIDSMSVKINKRIVEKSSSNIQILEKTVAEMREDDVNKLKEEYNRLVEGLKDAQVARE
TDVILSNPILPDEVLQEVVPGNIRNAEHFVGFLKRFVEYLKTRLRVQHVMQESPAGFLRD
IQSKVCIERKPLRFCAERLSSLLRTMEISDVADFSPLILVTHLATLVSTYTKGFTIIVEP
FDDKAPTVLNPVLHFTCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILDFHPVIMSS
FTMTLARPCLLPMIVAKGNDQVAISSKFETREDVAVIRNYGQLLVEFSAAVPDGLVCFFT
SYSYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFSRADKRSKLPKWIQEHLSDNLCNLSTEEAIQISKRW
LRQMAQPFTREDQLGLSLLTREQLEKEEAGKFEKQAQQL
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcagcgttgatgggttaattgtttactttccctacgattatatctaccctgag
caatatgcgtacatgctggagctcaagcgaggcctcgatgctaggggtcattgcctcttg
gagatgccttcaggtactggtaaaacggttactttgttatcgttgatcgtcgcttacatg
ttagaacatccattggaggtcactaagctgatttattgttctcgtactgttccggaaatt
gaaaaagttatagaagagttgaaaaatttgatggaatattatgaaaaagaagataatgtc
aagccaaaaatcgttggcttagttctaagttccaggaaaaatctctgtattcatcctgag
gtaagcaaagaacgggaaggtaaaatagtggatggcagatgtcattcgctgacagcttcc
tacatcagggaacgacacaactacgatgattctacgccagtttgtaacttttatgaagga
tttgatatggaaggacgtgagcaagttgtaccagctgggatctattcacttgacgatctt
aaagagtatggcagggatagaaattggtgtccatatttcctagcaaggttcacgatattg
cacgctcacattgtcgtttacagttaccactacttacttgatccaaaaattgctgaatca
gtttcaaaagaattgaataagagctctgtcgtggtatttgatgaggcgcacaatatcgat
aatgtatgtatagactctatgagcgtcaaaataaacaaacggattgtagagaaaagttct
tcgaatatacaaattctagagaaaaccgttgctgaaatgagagaagacgacgtgaacaaa
ttaaaagaagaatataatcgtctagttgagggacttaaagatgctcaagttgcaagagaa
accgatgttattttatcaaatcccattttgcccgatgaagtacttcaagaggttgttcca
ggaaatataagaaacgctgagcattttgtaggctttttaaaacggttcgttgaatactta
aagaccaggcttcgggtgcagcatgtgatgcaagagtctccggcaggattcctacgtgat
attcaatcaaaagtttgtattgagagaaaacctctcagattctgtgctgagagattatcg
tcgttgttacgaactatggaaataagcgacgttgcagacttttcccctctgattctggtc
acacatcttgccactctggtttctacctatacgaaaggcttcaccatcatagtggagcca
ttcgatgacaaagctccaaccgttttaaatcctgtgctacattttacctgcctcgattct
tccattgccatgaaaccaatatttgatagatttcagtcagtcgttattacatcagggacg
ttatcgcccctggatatgtatccaaaaattctggacttccatcctgtaatcatgtcatcg
ttcaccatgactttggcaaggccatgtttattaccaatgattgtcgctaaaggtaacgac
caggtggcgatatcatcgaaattcgaaactcgagaagatgtagctgtaatcagaaattac
gggcaattgttagtggaattttcagctgcggtgccggatggtcttgtttgtttcttcacg
tcctattcatacatggagtcagttgtcgctgcttggtacgatcaaggcgtagtggaccaa
ttacagaggcataaattactgttcattgaaacacaagattcagctgaaacaagtttagca
ctaatcaattacatcaaagcttgcgaaaatggccgaggagcggttttactttcagtagca
agaggcaaggtatcggagggtgtggatttcgaccatcacctgggaagagccgttcttatg
ttcggtataccctatgtttatacacagtcgcgaattttaaaggccagattagagtacctt
cgagatcaatttcagataagggaaaacgattttctaacattcgacgcaatgcgacatgcc
gcacagtgtgttggccgtgccattagaggaaaaaccgactatggtataatggtgtttgca
gataagcgattctcaagggcagacaaaagaagtaaactgccaaaatggattcaggaacat
ctttcagacaacctttgtaatttatctacagaagaagctatacagataagcaaaagatgg
ctacggcagatggctcaaccgttcacaagagaagatcaactaggattgtcacttcttaca
agggagcagctagagaaggaagaagcaggtaaatttgagaaacaggcacaacagctctag
DBGET
integrated database retrieval system
