KEGG   Athalia rosae (coleseed sawfly): 105683377
Entry
105683377         CDS       T09776                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
aroa  Athalia rosae (coleseed sawfly)
Pathway
aroa03013  Nucleocytoplasmic transport
aroa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aroa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105683377
  09122 Translation
   03013 Nucleocytoplasmic transport
    105683377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aroa03019]
    105683377
   03041 Spliceosome [BR:aroa03041]
    105683377
Messenger RNA biogenesis [BR:aroa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     105683377
Spliceosome [BR:aroa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105683377
SSDB
Motif
Pfam: Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_WDR5 Beta-prop_EML_2 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR41 Beta-prop_NOL10_N Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_TEP1_C EIF3I Beta-prop_WDR75_1st DSE1_N Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 105683377
NCBI-ProteinID: XP_012251339
LinkDB
Position
3
AA seq 335 aa
MSEHKSYSMNEKLFYNTVQCQTFSPDGQYLAAGNIYGAVSIYELSKALGPYQDHETDPRG
PNYRFTAYPDQQVHSIVATDKFLITGTVGEISGWDWNTVISNKVSKIKVSWSIQIPTVKD
SYERPDVNYMVLSKEDNLLHAGCGDNKIYTFSLEDGKLLRTLEGHEDFIHALSLLGNQLA
SASEDGSVRLWDLRQKETLNIVKPFLAEKVARPRLGKWIGTVDFTEDWLLCGGGPKLALW
HMRTMEAATIFELPDQGIHSGTIYEERVIVGGAMPSVQHLNYQGEILAEVLTSSNTIYSI
VYQDNPPKLLSMAGSSNNIDICTNFSYREMTLKFA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgtcggaacataaatcgtatagcatgaacgagaaattattttacaacactgtccagtgt
cagactttttctcctgacggacaatatttggcggctggtaatatatacggcgctgtctcc
atttacgaactttcgaaagcactgggcccttatcaagatcatgagactgatcccagagga
ccaaactatcgattcacagcatatccagaccagcaagtacacagtatcgttgcaacagac
aaatttcttataacggggacggttggtgaaatatctggatgggattggaacactgtcatc
tcaaataaagtatccaaaatcaaagtatcatggtcaatacaaataccaactgtcaaggac
agttacgagaggcctgatgtgaactatatggtactgtcaaaagaagacaaccttctgcat
gctggctgcggagataacaaaatttatacttttagtctagaagatggtaaattactgagg
acacttgaaggccacgaggattttatccatgcgctttctctgttaggcaaccaattggca
tctgccagtgaagatgggtctgtaaggttgtgggatttgcgccaaaaggaaactttaaat
atagtgaagccatttttagcggaaaaagtagccaggccaaggcttggaaagtggattgga
actgtagatttcaccgaagattggctgctttgtggaggtggccccaagttggctctttgg
catatgcgtaccatggaggctgcaacgatattcgagttaccagaccaaggaatccattct
ggaacgatctatgaagagagagttattgtcggaggtgcaatgccgagtgttcaacatctc
aactatcaaggagaaatattagctgaagtgctaacgtccagcaacacgatatactccatc
gtttatcaagataacccaccgaaattattgagcatggctggatctagcaacaacattgat
atttgcacgaacttcagctacagagaaatgacacttaaattcgcttga

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