Athalia rosae (coleseed sawfly): 105683421
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Entry
105683421 CDS
T09776
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03022
Basal transcription factors
aroa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105683421
09124 Replication and repair
03420 Nucleotide excision repair
105683421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aroa03021
]
105683421
03400 DNA repair and recombination proteins [BR:
aroa03400
]
105683421
Transcription machinery [BR:
aroa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105683421
DNA repair and recombination proteins [BR:
aroa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105683421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
105683421
NCBI-ProteinID:
XP_012251418
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All DBs
Position
3:complement(16394373..16396816)
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AA seq
402 aa
AA seq
DB search
MADEDDGKEYRWETGYEKTWEAIKEDDDGLLEGAVADIIQRAKRKRQSEKQGGARLGMMR
HLYIILDCSEAMSNQDLKPTRLLCSIKLLEDFIDEFFDQNPISQLGLIVTRNKRAEKLSE
LGGNPKKHIKELKGLHLSALTGEPSIQNSLELALKSLRLLPSHASREILLLLGSLTTCDP
GDISVTIDSMKSEGVRCSVIGLAAELYVCKRLATATGGEHGVVLDDKHYKEQLSIHVDPP
AAATRLDSALVKMGFPHHALHSTTETPMTMCMCHVESSEDESRLVTAGYLCPQCLSKHCE
LPVECRACGLTLVSAPHLARSYHHLFPVENYKEVPYEGSPTICSGCRKPFTQLDKKVYMC
GKCSQGFCLDCEIFIHETLHTCPGCATNPDTFQISSENVPVN
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgacggcaaagaatatcgatgggaaacgggatacgaaaagacttgg
gaggcgatcaaagaagatgatgatggattgttggaaggagccgtagcagatattattcaa
agagcaaagagaaaacgacaatcagaaaagcagggtggggcaagactgggaatgatgaga
catctttacattattctcgattgttccgaagctatgtcaaatcaggacttgaaaccaaca
agattgctatgctctattaaactcttagaagacttcattgatgaattctttgaccaaaat
ccgatcagtcagctaggactcattgtgaccagaaacaaacgagccgaaaaattgagcgag
ctgggtggaaatcctaaaaaacatatcaaggaactgaagggcttgcatctttcggctcta
acgggtgaaccatcaattcaaaactctttagaattagctctgaagtctttgagattatta
ccatcacacgcgagtagggaaatattgttgttgttgggatccttaacgacatgtgatcca
ggggatataagtgtaacaatagatagtatgaagtctgaaggagtgcgatgcagcgttatt
ggtttagctgctgaattatacgtctgtaaacgcttggcaactgcaactggtggtgaacac
ggtgtggttttagacgataaacattataaagaacagttgagtattcatgtggatccacca
gccgctgcaactagattagattctgccctagttaaaatgggctttccccatcacgcccta
cactcaacaactgaaactcccatgacaatgtgcatgtgccacgtagaaagctctgaggat
gagagcaggctggtaacagctggttacttgtgtccacaatgtctcagtaaacattgcgaa
ctaccagtggaatgtcgggcttgtggtctgactcttgtatctgctccacatttagcccgt
tcctatcaccatttattcccggttgaaaactataaggaagtaccatatgagggctcccct
acaatatgctctggctgtaggaagcctttcacgcagctggataaaaaggtgtacatgtgc
ggaaaatgcagtcaaggattctgtttagattgcgaaatcttcatccatgaaacactacat
acctgccctggatgcgcaacaaatccagatacttttcaaatatcgtcagagaatgttcca
gttaattag
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