Athalia rosae (coleseed sawfly): 105683471
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Entry
105683471 CDS
T09776
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105683471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aroa03041
]
105683471
Enzymes [BR:
aroa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105683471
Spliceosome [BR:
aroa03041
]
Complex C
Other components
Step II factors
105683471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
AAA_22
DEAD
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
ABC_tran
AAA_16
ATPase_2
PhoH
AAA_30
ATPase
Sigma54_activ_2
Sigma54_activat
SRP54
cobW
AAA_23
Motif
Other DBs
NCBI-GeneID:
105683471
NCBI-ProteinID:
XP_012251508
LinkDB
All DBs
Position
3:complement(16321145..16327225)
Genome browser
AA seq
1142 aa
AA seq
DB search
MSEDRPEDSDLYRLEGENNQAGGLIIRKKVSDHTFKKPQASILGLDKLAERKRRENSQEP
TNVQSSPSTSSSPDHNSDYKERKYRLHEEETPTHTGGVNSEARQRFEVRLSRQRLDAQDK
LYREKRRHDREKERDRSRSRDSIRQSPLRFKDEPQTPKFRSKDSTSRSNWDDDEDFEPRK
STWDHPTPKLYGSKDPKDSIRSEWTPSYKYNSWNKERKASGATPMTDGEERELWEEEQKR
LDREWYALDDGENRPFADVSEEYAQKKEMEMEAKRERRVSAQQRQINKDNELWERNRMLT
SGVVSSLEHDDDPDDEGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPSSDMAVVA
RKGSALVRAYREQKERRRAQRKHWELAGTAIGNIMGVPGADGKAGADGDREGQDTDFKAG
QKYARHINTGESSGEFRHKTIQNQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQ
LTQYLHEDGYSCYGIIGCTQPRRVAAMSVAKRVSDEMATPLGEKVGYAIRFEDCTSKETV
IKYMTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTS
ATMDSTKFSAFFGNAATFAIPGRTFPVEIIHAKNSVEDYVDAAVKQVLQIHLQPRSGDVL
VFMPGQEDIEVTCEALKERLGEIDSAPPLSILPIYSQLPSDLQAKIFQRAEGGFRKCVVA
TNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGH
CYRLYTRRQYMDELLFTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSL
YQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIF
YRPKGREEDSDSAREKFQVPESDHLTFLNVYNQWKSNGYSTSWCNDHFIHGKAMRKVREV
RQQLEEILKQQKIEVVSCGTDWDVVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPT
SALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQ
ALQHLHEMEGQMKVAEEEMRLRAQEQLEKEQASVRKKEILTPGSREPGTPASYRKTPGRF
GL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagatcgaccagaagattcggacctatacaggttagaaggtgaaaataatcaa
gctggtgggttgataattagaaagaaggtatcggatcatacctttaagaaaccgcaagcc
tctatcctaggattagacaagttggctgaacgcaagcgtcgagaaaattctcaagaaccg
actaacgtacagtctagtcctagcaccagcagctctccagatcataactcggattataaa
gagaggaagtatcgactgcatgaagaagagacaccaactcatactggtggggttaattca
gaagctcggcaaagatttgaggttcgattgagccgtcaaagattagatgcacaagataaa
ttatacagagaaaaacgccgacatgacagagaaaaagagagggatcgaagtcgcagccga
gacagcatcaggcaatcaccgctgcgatttaaagatgagccacaaactccaaagtttaga
tcaaaggactcaacctctcggagtaattgggatgatgatgaagattttgaacccagaaag
tcaacttgggatcatcctactccaaaattatatggatctaaagatccaaaggacagcatc
agaagtgaatggacaccttcttataagtacaactcttggaataaagaacgcaaggcatct
ggagccactcccatgactgatggggaagaaagagagttatgggaagaagaacaaaaaaga
ctagatcgagagtggtatgctttggacgatggagaaaatcgtccgtttgctgacgtatct
gaggagtatgcacagaaaaaggagatggagatggaggctaaacgtgagagacgagtatca
gctcaacagcgacaaataaacaaggataacgagctgtgggagcgaaacaggatgttgact
tcaggtgtagttagctctctggaacatgatgatgatcctgatgatgagggcgaagctaga
gttcatcttttggtccacaacgttgtcccaccttttctagatggtcgcatcgtattcacg
aagcagcccgagccagtagtaccagttcgagatccgagttcagacatggctgtggttgct
cgaaaagggtcagcattagttcgagcttatcgagaacaaaaagagcgacggagagcacaa
cgtaagcattgggaattggctggcacagctattggaaatataatgggcgtccctggagct
gatggaaaggcaggcgccgacggagatcgagaaggtcaggatactgacttcaaggctggg
cagaagtatgctcgtcacatcaacacgggtgaaagctcgggcgagttcaggcacaaaaca
atccaaaatcaacgacgaagtcttccagtttttgccgtcagacaagaactactgaatgtt
atcagggaaaatagcgttgttgtaattgtgggagaaactggtagtggcaaaacaactcag
ctgacacagtacctgcatgaggatgggtacagttgttacggaataataggttgtactcaa
cctcgtagagtagcggcaatgtcagttgccaaaagggtatctgatgaaatggctacgccg
ctaggagagaaagtgggatacgcaattcgttttgaagattgtacttcaaaagagacagtc
atcaaatatatgactgatggaattcttttacgagagagcttacgtgaaggagatttggat
agatacagtgtcattattatggatgaggctcatgaacggtctttatcgaccgacgtacta
tttgggctgcttagagaggtagttgcacgtcgtcacgatctgaagctgatagtaacgtct
gcaactatggactctactaaattctctgcattctttggtaatgcggcaacattcgccatt
ccgggacgaactttccccgttgaaataattcacgctaaaaactccgtcgaagattatgtg
gatgcagctgtcaagcaggtcctacagattcatcttcagccccgaagcggtgatgtttta
gtattcatgcctggtcaagaggacattgaagtaacatgcgaagcactgaaggaaaggctt
ggcgaaatcgattctgcacctcctctgtccattctccctatctattcgcaacttccctct
gacttacaagccaaaattttccaacgtgcagaaggtggattccgcaagtgtgtcgtggca
actaacattgcagaaacatctcttacggtagacggcattgtctttgtggtagactcaggc
tattgcaaactaaaagtctacaatccaaggataggtatggatgcgctccaggtatatcct
gtgtctagagcaaacgctgatcagagagcagggcgagccggacgtactggtcctggtcat
tgttatcggctttatacacgccgacaatacatggacgagctactgttcactggagtgcca
gaaattcagcgaactaatttagccaacaccgtccttctgctcaaatcacttggagtccaa
gacttgcttgcctttcacttcatggatcctccaccccaagacaatatactcaattcttta
tatcagttatggatcctgggtgccttggaccatacagggcgcttgactccccttgggcgt
caaatggcagaatttccccttgatcctccacagtgtcagatgctcatcgttgcctcgcaa
cttggctgcactgctgacattctgataatagtatcaatgctgtcggtgccatcaatcttc
taccgacctaaagggcgagaagaggattcagattctgctagagaaaagttccaagtccca
gaatctgatcatttgacattcctgaatgtatacaatcaatggaagtcaaatggatattct
acttcgtggtgtaacgaccatttcatacacggtaaagcaatgcgtaaagttagagaggtc
cgacaacaacttgaggagatcctgaaacagcagaaaatagaggtcgtaagctgcggcact
gactgggatgtggtacgaaaatgtatttgttcggcatattttcatcaagctgcacgtctg
aaaggaataggagaatacgtcaactgccgtacaggaatgccttgccatcttcatcccaca
tctgctttattcggcatgggctttactcctgattacgtagtttaccatgagttagtcatg
actgccaaggaatatatgcaatgtgtcaccgctgttgatggacactggcttgcagaactc
ggacctatgtttttcagtgtcaaagaaactggacgtagcggcagagctaagcggcgacag
gccctacagcatctacatgaaatggaagggcagatgaaagttgctgaagaagagatgcga
ctcagagctcaggaacagcttgaaaaggaacaagcttcagttcgaaagaaagaaattttg
acgcccggttcgagggaaccaggaacccctgccagttatcgtaaaaccccaggccgattt
ggcttatga
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